Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2894 ATGCCGGCCGATGTCGATGATTCGTCCATAGCTTCAGGGGAGGCTAGCGTTTCTTCTCCAGGAGCGAAATCTGCCACTAAGAAAAAGCGAAATCTACCAGGAATGCCAGATCCGGAAGCTGAAGTAATTGCTCTATCCCGAAGACCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGCAACAAGGGGTTTCAGAGGGATCAGAATCTTCAGCTTCACCGGCGAGGTCACAATCTTCCATGGAAGCTCCGGCAGAGGACCAGTAAGGAGAGCTCTCGGTGATCTGACCGGGATTAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGATAAATGTTCGAAGAAGTACGCTGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGCACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCCAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCGGAGGAAAGTGCAAAAGCTCAGCCTAAGCCGGTGGACAAACCGGATTCGGACTCCGACCTGAAAGGCGGTTCTCAGACGGCGGTGGCGAAACCGAATCCAGAGCCTTCTCCGCCCCCTCCGCCATCACCACCACGGGCTCCATCTCCTCCACAGTCAACTGATGAGCTAACAACTGTGTTGCCTGTTCCAAGTCAAGAGCTGCCAGAGAATCCTTCCCAATGTATCGAAGAAGCACCGGGTACAACGGTTTTGAGTGCGAGCAGCAGCAGCAGCAAGAGCACGAGCAGCAATAGCAGTACGAGAAGTAGCGGATTCGCTGGCTTATTTGCTTCCACGACTACGTCGATAAGCCTTCAACCTCCAAGACCTCCTGCATTTACAGACCTAATGCAAGCCATGGCTTGTTCAGATCGCTCATCAGACTATGCACCATCTACAACCATCGAACCTATTTCTCTGTGTCTTGCAATGAATCAAGGGCCACCGATGTTCGGAACTGCCAGCCAAGAACTTCGACAGTATGCACCGACGCCACAGCCTGCAATGTCCGCCACAGCATTACTCCAAAAAGCTGCTCAAATGGGTGCAGCAGCATCGAATGCCTCGTTACTTCGCGGTTTGGGCTTAGTATCCTCTTCCTCTTCGGCTGCCCAGCAAGAGAGCTTGCCATGGAACCACCAGAGGCAAGTCGAACCGGATGGCATCTCGATCGCTGCAGGGCTCGGACTTGGACTACCATGTGATGGAAATTCCGGATTGAAGGAACTAATGAGAGGAAACCATTCCATGTTTGCTCCAAAACACACCACCCTCGATTTCCTCGGACTGGGAATGGCAGCTGGAGGCAGCCCAAACAGTGGCCTGGCTGCGCTAATTACATCAGTTGGCAGCGGCGTAGACGTGACCACGACACCCCGATCATACAGCAACGGTGACATATCCGGCAACGACATGAACAGAAGCAACTGA 1461 51.54 MPADVDDSSIASGEASVSSPGAKSATKKKRNLPGMPDPEAEVIALSRRPFWPQIDLFARFATRGFRGIRIFSFTGEVTIFHGSSGRGPVRRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKAQPKPVDKPDSDSDLKGGSQTAVAKPNPEPSPPPPPSPPRAPSPPQSTDELTTVLPVPSQELPENPSQCIEEAPGTTVLSASSSSSKSTSSNSSTRSSGFAGLFASTTTSISLQPPRPPAFTDLMQAMACSDRSSDYAPSTTIEPISLCLAMNQGPPMFGTASQELRQYAPTPQPAMSATALLQKAAQMGAAASNASLLRGLGLVSSSSSAAQQESLPWNHQRQVEPDGISIAAGLGLGLPCDGNSGLKELMRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSVGSGVDVTTTPRSYSNGDISGNDMNRSN 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49846427 49848618 - Lag0013386.1 Lac1g2894 596465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2894 486 MobiDBLite consensus disorder prediction 1 36 - -
Lac1g2894 486 MobiDBLite consensus disorder prediction 11 25 - -
Lac1g2894 486 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 90 107 - -
Lac1g2894 486 MobiDBLite consensus disorder prediction 245 267 - -
Lac1g2894 486 MobiDBLite consensus disorder prediction 466 486 - -
Lac1g2894 486 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 138 175 - -
Lac1g2894 486 SUPERFAMILY beta-beta-alpha zinc fingers 107 156 IPR036236 -
Lac1g2894 486 FunFam protein indeterminate-domain 5, chloroplastic-like 90 169 - -
Lac1g2894 486 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 48 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac1g2894 486 MobiDBLite consensus disorder prediction 165 220 - -
Lac1g2894 486 Gene3D Classic Zinc Finger 90 160 - -
Lac1g2894 486 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 111 135 - -
Lac1g2894 486 MobiDBLite consensus disorder prediction 195 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2894 Lac-Chr1:49846427 Lac6g0394 Lac-Chr6:3228385 7.60E-54 dispersed
Lac1g2894 Lac-Chr1:49846427 Lac1g2895 Lac-Chr1:49859721 4.30E-166 tandem
Lac5g2053 Lac-Chr5:39012288 Lac1g2894 Lac-Chr1:49846427 1.50E-27 transposed
Lac1g2894 Lac-Chr1:49846427 Lac2g0223 Lac-Chr2:1709421 1.00E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23343 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2894 K25869 - csv:101217597 552.747