Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2894 | ATGCCGGCCGATGTCGATGATTCGTCCATAGCTTCAGGGGAGGCTAGCGTTTCTTCTCCAGGAGCGAAATCTGCCACTAAGAAAAAGCGAAATCTACCAGGAATGCCAGATCCGGAAGCTGAAGTAATTGCTCTATCCCGAAGACCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGCAACAAGGGGTTTCAGAGGGATCAGAATCTTCAGCTTCACCGGCGAGGTCACAATCTTCCATGGAAGCTCCGGCAGAGGACCAGTAAGGAGAGCTCTCGGTGATCTGACCGGGATTAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGATAAATGTTCGAAGAAGTACGCTGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGCACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCCAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCGGAGGAAAGTGCAAAAGCTCAGCCTAAGCCGGTGGACAAACCGGATTCGGACTCCGACCTGAAAGGCGGTTCTCAGACGGCGGTGGCGAAACCGAATCCAGAGCCTTCTCCGCCCCCTCCGCCATCACCACCACGGGCTCCATCTCCTCCACAGTCAACTGATGAGCTAACAACTGTGTTGCCTGTTCCAAGTCAAGAGCTGCCAGAGAATCCTTCCCAATGTATCGAAGAAGCACCGGGTACAACGGTTTTGAGTGCGAGCAGCAGCAGCAGCAAGAGCACGAGCAGCAATAGCAGTACGAGAAGTAGCGGATTCGCTGGCTTATTTGCTTCCACGACTACGTCGATAAGCCTTCAACCTCCAAGACCTCCTGCATTTACAGACCTAATGCAAGCCATGGCTTGTTCAGATCGCTCATCAGACTATGCACCATCTACAACCATCGAACCTATTTCTCTGTGTCTTGCAATGAATCAAGGGCCACCGATGTTCGGAACTGCCAGCCAAGAACTTCGACAGTATGCACCGACGCCACAGCCTGCAATGTCCGCCACAGCATTACTCCAAAAAGCTGCTCAAATGGGTGCAGCAGCATCGAATGCCTCGTTACTTCGCGGTTTGGGCTTAGTATCCTCTTCCTCTTCGGCTGCCCAGCAAGAGAGCTTGCCATGGAACCACCAGAGGCAAGTCGAACCGGATGGCATCTCGATCGCTGCAGGGCTCGGACTTGGACTACCATGTGATGGAAATTCCGGATTGAAGGAACTAATGAGAGGAAACCATTCCATGTTTGCTCCAAAACACACCACCCTCGATTTCCTCGGACTGGGAATGGCAGCTGGAGGCAGCCCAAACAGTGGCCTGGCTGCGCTAATTACATCAGTTGGCAGCGGCGTAGACGTGACCACGACACCCCGATCATACAGCAACGGTGACATATCCGGCAACGACATGAACAGAAGCAACTGA | 1461 | 51.54 | MPADVDDSSIASGEASVSSPGAKSATKKKRNLPGMPDPEAEVIALSRRPFWPQIDLFARFATRGFRGIRIFSFTGEVTIFHGSSGRGPVRRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKAQPKPVDKPDSDSDLKGGSQTAVAKPNPEPSPPPPPSPPRAPSPPQSTDELTTVLPVPSQELPENPSQCIEEAPGTTVLSASSSSSKSTSSNSSTRSSGFAGLFASTTTSISLQPPRPPAFTDLMQAMACSDRSSDYAPSTTIEPISLCLAMNQGPPMFGTASQELRQYAPTPQPAMSATALLQKAAQMGAAASNASLLRGLGLVSSSSSAAQQESLPWNHQRQVEPDGISIAAGLGLGLPCDGNSGLKELMRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSVGSGVDVTTTPRSYSNGDISGNDMNRSN | 486 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 49846427 | 49848618 | - | Lag0013386.1 | Lac1g2894 | 596465 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2894 | 486 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Lac1g2894 | 486 | MobiDBLite | consensus disorder prediction | 11 | 25 | - | - | |
Lac1g2894 | 486 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 90 | 107 | - | - | |
Lac1g2894 | 486 | MobiDBLite | consensus disorder prediction | 245 | 267 | - | - | |
Lac1g2894 | 486 | MobiDBLite | consensus disorder prediction | 466 | 486 | - | - | |
Lac1g2894 | 486 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 138 | 175 | - | - | |
Lac1g2894 | 486 | SUPERFAMILY | beta-beta-alpha zinc fingers | 107 | 156 | IPR036236 | - | |
Lac1g2894 | 486 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 90 | 169 | - | - | |
Lac1g2894 | 486 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 21 | 48 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lac1g2894 | 486 | MobiDBLite | consensus disorder prediction | 165 | 220 | - | - | |
Lac1g2894 | 486 | Gene3D | Classic Zinc Finger | 90 | 160 | - | - | |
Lac1g2894 | 486 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 111 | 135 | - | - | |
Lac1g2894 | 486 | MobiDBLite | consensus disorder prediction | 195 | 214 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2894 | Lac-Chr1:49846427 | Lac6g0394 | Lac-Chr6:3228385 | 7.60E-54 | dispersed | |
Lac1g2894 | Lac-Chr1:49846427 | Lac1g2895 | Lac-Chr1:49859721 | 4.30E-166 | tandem | |
Lac5g2053 | Lac-Chr5:39012288 | Lac1g2894 | Lac-Chr1:49846427 | 1.50E-27 | transposed | |
Lac1g2894 | Lac-Chr1:49846427 | Lac2g0223 | Lac-Chr2:1709421 | 1.00E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23343 | None | None | None | None | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g2894 | K25869 | - | csv:101217597 | 552.747 |