Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2895 ATGCCGGCCGATTTCGACAATTCCTCGCCGGCCTCCGCCGAACCCAGTGTCTCCTCCGCTGGAGCCGCCCTTCCGCCGCCCAAATCCGCCGCTAAGAAAAAGCGAAATCTACCCGGAATGCCAGATCCGGATGCGGAAGTGATTGCTCTGTCCCCGAAGACCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGCAATAAGGGGTTTCAGAGGGATCAGAATCTTCAGCTTCACCGGCGAGGCCACAATCTTCCATGGAAGCTCCGGCAGAGGTCCAGTAAGGAGGTCAAGAAGAAGGTCTATGTCTGCCCTGAGCCTTCTTGTGTTCATCATGATCCCTCTAGAGCTCTCGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGATAAGTGTTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGCACCAGAGAGTATAAATGCGATTGTGGTACTCTGTTTTCCAGGAGGGATAGCTTCATTACGCATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAGTGCAAAAGCTCAGCCTCAGTCTTTGGTGGACAAACCAGTTTCTAATTCTGAGCCGAAAGCTCGTTCTCAGAAGGCGGTGGAGCCAAACCCGGAGCCATCGCCGTCGCCTGCGCCGCCGTCACCTCCGGCGGCATCATCTCCTCCGCAGTCAACTTGTGTTCTGTCATCTGTTATGCCGATTCAGAGTCAAGATCGCCCGGAGAATCCCCCGCCGTATAACGAAGAAGCACCAGCTACGACGGGCATGAGTGGTAGCTGCAGCAGTAGCAAGAGCCCCAGCAGCAACAGCAGTTCGAGTAGTCGATTTGCTAGCTTGTTCGCGTCCACAACTACATCAATAAGCCTGCAACCTCCTCAACCCCCGGCGTTTACTGACTTAATACACGCTATGGCTTGTTCGGATCACTCGTCCGACTATGCTCCAACGACGACTACCGAACCTATTTCTCTCTGTCTTGCAACTAGCCATGGGGCATCAATTTTTGGGGCTGCTAGCCAAGGCCTCCGGCAGTACACTCCAACTCCACAACCTGCAATGTCCGCCACTGCATTGCTACAAAAGGCTGCTCAAATGGGAGCAGCAGCATCAAACGCCTCGTTACTTCGCGGATTGGGCTTAGTACCGTCCTCTTCGGCTGCACCGCAAGAGAGCTTGCCATGGAATCAAAGGCAAGTCGAACCCGATGGCATCTCGATTGCAGCAGGCCTTGGACTCGGACTCCCTTGCGATGGAAACTCCGGATTGAAGGAACTAATGAGAGGGAACCATTCCATATTTGCTCCAAAACACACCACCCTCGACTTCCTCGGACTGGGAATGGCAGCCGGTGGTAGCCCCAACAGCGGCCTGGCTGCGCTAATCACGTCGATAGGCGGGAGCGTGGACGTCACCGCAACAACCGGATCATACGGAGGTGGTGACATATCCAGCAAAGACATGAAGAGAAAGAATTGA 1530 53.2 MPADFDNSSPASAEPSVSSAGAALPPPKSAAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKAQPQSLVDKPVSNSEPKARSQKAVEPNPEPSPSPAPPSPPAASSPPQSTCVLSSVMPIQSQDRPENPPPYNEEAPATTGMSGSCSSSKSPSSNSSSSSRFASLFASTTTSISLQPPQPPAFTDLIHAMACSDHSSDYAPTTTTEPISLCLATSHGASIFGAASQGLRQYTPTPQPAMSATALLQKAAQMGAAASNASLLRGLGLVPSSSAAPQESLPWNQRQVEPDGISIAAGLGLGLPCDGNSGLKELMRGNHSIFAPKHTTLDFLGLGMAAGGSPNSGLAALITSIGGSVDVTATTGSYGGGDISSKDMKRKN 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49859721 49861949 - Lag0013387.1 Lac1g2895 596466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2895 509 Gene3D Classic Zinc Finger 115 195 - -
Lac1g2895 509 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 466 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac1g2895 509 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Lac1g2895 509 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 199 - -
Lac1g2895 509 MobiDBLite consensus disorder prediction 195 292 - -
Lac1g2895 509 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lac1g2895 509 MobiDBLite consensus disorder prediction 221 238 - -
Lac1g2895 509 MobiDBLite consensus disorder prediction 199 214 - -
Lac1g2895 509 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Lac1g2895 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Lac1g2895 509 SMART c2h2final6 61 83 IPR013087 -
Lac1g2895 509 SMART c2h2final6 102 132 IPR013087 -
Lac1g2895 509 SMART c2h2final6 137 157 IPR013087 -
Lac1g2895 509 MobiDBLite consensus disorder prediction 270 292 - -
Lac1g2895 509 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Lac1g2895 509 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Lac1g2895 509 Gene3D Classic Zinc Finger 41 108 - -
Lac1g2895 509 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Lac1g2895 509 MobiDBLite consensus disorder prediction 1 45 - -
Lac1g2895 509 MobiDBLite consensus disorder prediction 239 255 - -
Lac1g2895 509 FunFam protein indeterminate-domain 12-like 40 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2114 Lac-Chr1:42624689 Lac1g2895 Lac-Chr1:49859721 6.30E-89 dispersed
Lac1g2895 Lac-Chr1:49859721 Lac2g0223 Lac-Chr2:1709421 2.00E-113 dispersed
Lac1g2894 Lac-Chr1:49846427 Lac1g2895 Lac-Chr1:49859721 4.30E-166 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23344 PF00096 zf-C2H2 0.0051 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2895 K25869 - csv:101217597 800.431