Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2918 ATGGAGATAAGAGGTGAAGATGAGGAAATAGGAACTCCTTCTCCTTTGTGCTATAATCCATCAATTAGGGAATCTCCAACCAAACTGCCAAATTCTGATCATCCAATTCTAACAGCCGCTGATAGAAGAAGAGATCACACAGTACCCCAGCTCCATTTCTCTCATCATCAGAATCAAAACCATCAGAAACTGAGTCTGCATCAGTATTTACACAAACACACAAGAGACCATCCTGAGAATAACCCAGATCCAGTCCAGACCTCGGTTTCTGCCTCTCCATCTGCAGTTACTCAGCCGATCGCCAGCTGCAGATCAATCTCAAGAACACCACTTGCAAGTGCCACGGAAAACAATATTATTCCTTCTTCGGTTCGATACCGAGAATGTTTGAAGAACCACGCAGCAAGTACTGGAGGCCACGTTCTCGATGGTTGTGGCGAGTTCATGCCAGGTGGAGAAGATGGAACGCCCGAGGCCTTGAAGTGCGCAGCCTGTGAATGTCATCGGAACTTTCACCGCAAAGAGACGAAAGATGAGCCTTCGCAGCAAGCTTTACCCAGTGGCTTCTTCATCTCCAACTCCGTCAGAAACAATGGCCATCGCACTGATAGGACGCCAGTTCCACTCTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCGATGATGATGGCATTTGGAGGAAGCAATGGAGCTCCAGACGAGTCTTCCAGTGAAGATCTGAACATGTATCACCAGTCCAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGCCACAACAAATGAAAAAACGATTTAGAACAAAGTTCACACAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAATTGGGGTGGAAGATTCAGAAACATGATGAACTAGAAGTGCAGCAGTTCTGCGCTGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAATGTAA 987 46.81 MEIRGEDEEIGTPSPLCYNPSIRESPTKLPNSDHPILTAADRRRDHTVPQLHFSHHQNQNHQKLSLHQYLHKHTRDHPENNPDPVQTSVSASPSAVTQPIASCRSISRTPLASATENNIIPSSVRYRECLKNHAASTGGHVLDGCGEFMPGGEDGTPEALKCAACECHRNFHRKETKDEPSQQALPSGFFISNSVRNNGHRTDRTPVPLSRHHQLPAVPISSMMMAFGGSNGAPDESSSEDLNMYHQSNNGARDLFGQQPQQMKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50022516 50023502 + Lag0013410.1 Lac1g2918 596489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2918 328 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 126 175 IPR006456 -
Lac1g2918 328 Pfam ZF-HD protein dimerisation region 124 176 IPR006456 -
Lac1g2918 328 NCBIfam homeobox domain, ZF-HD class 264 321 IPR006455 -
Lac1g2918 328 Gene3D - 252 325 - -
Lac1g2918 328 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 125 175 IPR006456 -
Lac1g2918 328 MobiDBLite consensus disorder prediction 18 32 - -
Lac1g2918 328 MobiDBLite consensus disorder prediction 230 261 - -
Lac1g2918 328 FunFam Zinc-finger homeodomain protein 2 254 325 - -
Lac1g2918 328 MobiDBLite consensus disorder prediction 181 204 - -
Lac1g2918 328 SUPERFAMILY Homeodomain-like 259 325 IPR009057 -
Lac1g2918 328 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 83 322 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lac1g2918 328 MobiDBLite consensus disorder prediction 232 261 - -
Lac1g2918 328 MobiDBLite consensus disorder prediction 177 209 - -
Lac1g2918 328 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2918 Lac-Chr1:50022516 Lac6g0418 Lac-Chr6:3408879 5.60E-53 dispersed
Lac1g2918 Lac-Chr1:50022516 Lac1g2792 Lac-Chr1:49009692 7.60E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23347 PF04770 ZF-HD_dimer 1.10E-30 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2918 - - - 0.0