Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2918 ATGGAGATAAGAGGTGAAGATGAGGAAATAGGAACTCCTTCTCCTTTGTGCTATAATCCATCAATTAGGGAATCTCCAACCAAACTGCCAAATTCTGATCATCCAATTCTAACAGCCGCTGATAGAAGAAGAGATCACACAGTACCCCAGCTCCATTTCTCTCATCATCAGAATCAAAACCATCAGAAACTGAGTCTGCATCAGTATTTACACAAACACACAAGAGACCATCCTGAGAATAACCCAGATCCAGTCCAGACCTCGGTTTCTGCCTCTCCATCTGCAGTTACTCAGCCGATCGCCAGCTGCAGATCAATCTCAAGAACACCACTTGCAAGTGCCACGGAAAACAATATTATTCCTTCTTCGGTTCGATACCGAGAATGTTTGAAGAACCACGCAGCAAGTACTGGAGGCCACGTTCTCGATGGTTGTGGCGAGTTCATGCCAGGTGGAGAAGATGGAACGCCCGAGGCCTTGAAGTGCGCAGCCTGTGAATGTCATCGGAACTTTCACCGCAAAGAGACGAAAGATGAGCCTTCGCAGCAAGCTTTACCCAGTGGCTTCTTCATCTCCAACTCCGTCAGAAACAATGGCCATCGCACTGATAGGACGCCAGTTCCACTCTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCGATGATGATGGCATTTGGAGGAAGCAATGGAGCTCCAGACGAGTCTTCCAGTGAAGATCTGAACATGTATCACCAGTCCAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGCCACAACAAATGAAAAAACGATTTAGAACAAAGTTCACACAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAATTGGGGTGGAAGATTCAGAAACATGATGAACTAGAAGTGCAGCAGTTCTGCGCTGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAATGTAA 987 46.81 MEIRGEDEEIGTPSPLCYNPSIRESPTKLPNSDHPILTAADRRRDHTVPQLHFSHHQNQNHQKLSLHQYLHKHTRDHPENNPDPVQTSVSASPSAVTQPIASCRSISRTPLASATENNIIPSSVRYRECLKNHAASTGGHVLDGCGEFMPGGEDGTPEALKCAACECHRNFHRKETKDEPSQQALPSGFFISNSVRNNGHRTDRTPVPLSRHHQLPAVPISSMMMAFGGSNGAPDESSSEDLNMYHQSNNGARDLFGQQPQQMKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50022516 50023502 + Lag0013410.1 Lac1g2918 596489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2918 328 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 126 175 IPR006456 -
Lac1g2918 328 Pfam ZF-HD protein dimerisation region 124 176 IPR006456 -
Lac1g2918 328 NCBIfam homeobox domain, ZF-HD class 264 321 IPR006455 -
Lac1g2918 328 Gene3D - 252 325 - -
Lac1g2918 328 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 125 175 IPR006456 -
Lac1g2918 328 MobiDBLite consensus disorder prediction 18 32 - -
Lac1g2918 328 MobiDBLite consensus disorder prediction 230 261 - -
Lac1g2918 328 FunFam Zinc-finger homeodomain protein 2 254 325 - -
Lac1g2918 328 MobiDBLite consensus disorder prediction 181 204 - -
Lac1g2918 328 SUPERFAMILY Homeodomain-like 259 325 IPR009057 -
Lac1g2918 328 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 83 322 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lac1g2918 328 MobiDBLite consensus disorder prediction 232 261 - -
Lac1g2918 328 MobiDBLite consensus disorder prediction 177 209 - -
Lac1g2918 328 MobiDBLite consensus disorder prediction 1 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2918 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2918 Lac-Chr1:50022516 Lac6g0418 Lac-Chr6:3408879 5.60E-53 dispersed
Lac1g2918 Lac-Chr1:50022516 Lac1g2792 Lac-Chr1:49009692 7.60E-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0980 . 52 247 ZF-HD Transcription Factor Family AT5G65410 55.1 1.1e-44 177.9
Lac5g1919 . 44 210 ZF-HD Transcription Factor Family AT4G24660 53.3 1.9e-47 186.8
Lac13g2376 . 85 294 ZF-HD Transcription Factor Family AT2G02540 55.3 4.7e-49 192.6
Lac13g2376 . 85 297 ZF-HD Transcription Factor Family AT1G14440 50.9 6.6e-51 198.7
Lac13g2376 . 85 296 ZF-HD Transcription Factor Family AT1G75240 55.0 1.6e-36 151.0
Lac1g2918 . 97 328 ZF-HD Transcription Factor Family AT2G18350 51.9 1.1e-54 211.1
Lac8g2681 . 17 263 ZF-HD Transcription Factor Family AT5G15210 56.5 5.2e-52 202.2
Lac8g0622 . 1 263 ZF-HD Transcription Factor Family AT5G15210 53.4 1.2e-48 191.0
Lac8g2681 . 10 278 ZF-HD Transcription Factor Family AT3G28920 59.6 5.7e-63 238.8
Lac8g0622 . 1 258 ZF-HD Transcription Factor Family AT3G28920 62.1 1.8e-56 217.2
Lac8g2681 . 12 269 ZF-HD Transcription Factor Family AT5G39760 54.9 1.9e-51 200.7
Lac8g0622 . 1 256 ZF-HD Transcription Factor Family AT5G39760 61.7 3.9e-49 193.0
Lac8g2681 . 67 266 ZF-HD Transcription Factor Family AT1G69600 50.7 2.0e-47 186.8
Lac13g2376 . 85 294 ZF-HD Transcription Factor Family AT2G02540 55.3 4.7e-49 192.6
Lac5g1919 . 44 210 ZF-HD Transcription Factor Family AT4G24660 53.3 1.9e-47 186.8
Lac8g2681 . 12 269 ZF-HD Transcription Factor Family AT5G39760 54.9 1.9e-51 200.7
Lac8g0622 . 1 256 ZF-HD Transcription Factor Family AT5G39760 61.7 3.9e-49 193.0
Lac1g2918 . 97 328 ZF-HD Transcription Factor Family AT2G18350 51.9 1.1e-54 211.1
Lac6g0980 . 52 247 ZF-HD Transcription Factor Family AT5G65410 55.1 1.1e-44 177.9
Lac8g2681 . 67 266 ZF-HD Transcription Factor Family AT1G69600 50.7 2.0e-47 186.8
Lac8g2681 . 17 263 ZF-HD Transcription Factor Family AT5G15210 56.5 5.2e-52 202.2
Lac8g0622 . 1 263 ZF-HD Transcription Factor Family AT5G15210 53.4 1.2e-48 191.0
Lac13g2376 . 85 297 ZF-HD Transcription Factor Family AT1G14440 50.9 6.6e-51 198.7
Lac13g2376 . 85 296 ZF-HD Transcription Factor Family AT1G75240 55.0 1.6e-36 151.0
Lac8g2681 . 10 278 ZF-HD Transcription Factor Family AT3G28920 59.6 5.7e-63 238.8
Lac8g0622 . 1 258 ZF-HD Transcription Factor Family AT3G28920 62.1 1.8e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23347 PF04770 ZF-HD_dimer 1.10E-30 No_clan Lac TF