Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2918 | ATGGAGATAAGAGGTGAAGATGAGGAAATAGGAACTCCTTCTCCTTTGTGCTATAATCCATCAATTAGGGAATCTCCAACCAAACTGCCAAATTCTGATCATCCAATTCTAACAGCCGCTGATAGAAGAAGAGATCACACAGTACCCCAGCTCCATTTCTCTCATCATCAGAATCAAAACCATCAGAAACTGAGTCTGCATCAGTATTTACACAAACACACAAGAGACCATCCTGAGAATAACCCAGATCCAGTCCAGACCTCGGTTTCTGCCTCTCCATCTGCAGTTACTCAGCCGATCGCCAGCTGCAGATCAATCTCAAGAACACCACTTGCAAGTGCCACGGAAAACAATATTATTCCTTCTTCGGTTCGATACCGAGAATGTTTGAAGAACCACGCAGCAAGTACTGGAGGCCACGTTCTCGATGGTTGTGGCGAGTTCATGCCAGGTGGAGAAGATGGAACGCCCGAGGCCTTGAAGTGCGCAGCCTGTGAATGTCATCGGAACTTTCACCGCAAAGAGACGAAAGATGAGCCTTCGCAGCAAGCTTTACCCAGTGGCTTCTTCATCTCCAACTCCGTCAGAAACAATGGCCATCGCACTGATAGGACGCCAGTTCCACTCTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCGATGATGATGGCATTTGGAGGAAGCAATGGAGCTCCAGACGAGTCTTCCAGTGAAGATCTGAACATGTATCACCAGTCCAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGCCACAACAAATGAAAAAACGATTTAGAACAAAGTTCACACAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAATTGGGGTGGAAGATTCAGAAACATGATGAACTAGAAGTGCAGCAGTTCTGCGCTGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAATGTAA | 987 | 46.81 | MEIRGEDEEIGTPSPLCYNPSIRESPTKLPNSDHPILTAADRRRDHTVPQLHFSHHQNQNHQKLSLHQYLHKHTRDHPENNPDPVQTSVSASPSAVTQPIASCRSISRTPLASATENNIIPSSVRYRECLKNHAASTGGHVLDGCGEFMPGGEDGTPEALKCAACECHRNFHRKETKDEPSQQALPSGFFISNSVRNNGHRTDRTPVPLSRHHQLPAVPISSMMMAFGGSNGAPDESSSEDLNMYHQSNNGARDLFGQQPQQMKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM | 328 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 50022516 | 50023502 | + | Lag0013410.1 | Lac1g2918 | 596489 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2918 | 328 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 126 | 175 | IPR006456 | - | |
Lac1g2918 | 328 | Pfam | ZF-HD protein dimerisation region | 124 | 176 | IPR006456 | - | |
Lac1g2918 | 328 | NCBIfam | homeobox domain, ZF-HD class | 264 | 321 | IPR006455 | - | |
Lac1g2918 | 328 | Gene3D | - | 252 | 325 | - | - | |
Lac1g2918 | 328 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 125 | 175 | IPR006456 | - | |
Lac1g2918 | 328 | MobiDBLite | consensus disorder prediction | 18 | 32 | - | - | |
Lac1g2918 | 328 | MobiDBLite | consensus disorder prediction | 230 | 261 | - | - | |
Lac1g2918 | 328 | FunFam | Zinc-finger homeodomain protein 2 | 254 | 325 | - | - | |
Lac1g2918 | 328 | MobiDBLite | consensus disorder prediction | 181 | 204 | - | - | |
Lac1g2918 | 328 | SUPERFAMILY | Homeodomain-like | 259 | 325 | IPR009057 | - | |
Lac1g2918 | 328 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 83 | 322 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Lac1g2918 | 328 | MobiDBLite | consensus disorder prediction | 232 | 261 | - | - | |
Lac1g2918 | 328 | MobiDBLite | consensus disorder prediction | 177 | 209 | - | - | |
Lac1g2918 | 328 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2918 | Lac-Chr1:50022516 | Lac6g0418 | Lac-Chr6:3408879 | 5.60E-53 | dispersed | |
Lac1g2918 | Lac-Chr1:50022516 | Lac1g2792 | Lac-Chr1:49009692 | 7.60E-42 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23347 | PF04770 | ZF-HD_dimer | 1.10E-30 | No_clan | Lac | TF |
Pathway information
