Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2922 ATGTCCTTCAAAAGCTTTTTCCGAGAGCTGAGGGAAATGAAAGATGGACTCAGAATCAAACCGAAACAAGGGGGAGAAGGGAGGAATTGGCGAAGTCGCACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATTCGTAGAGTAGAAGAGAGTGAAACCTCGTGGCCTGCTAGGACTGTTGTCCTTTCTTGTGCGTCAGTGTGCAAGTCATGGAGAAACATTACAAAGGAAGTTGTTAAAACTCCTGAGCAGTGTGGGAGGCTCACTTTTCCCATTTCACTGAAACAGCCGGGACCTCGGGACTCTCCAATTCAGTGCTATGTTAGAAGGCATAGAGCAACTTCAACCTATTTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAAGTGATAAACTGTTATTAGCAGCCAAGAGAATAAGAAGGGCTACGGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGAAAATTAAGGTCCAACTTTTTTGGCACAAAGTTCACCATGTATGATAGTCAACCACCAGTTCTCTCTGTAGTCCAACAGAATAATCAAATAAATCGTAGGTTTCATGCTAAACAAGTCTCTCCAAGAATGTCAGCTTGTAACTACACTGTAGGGACAATCTCTTATGAGCTTAATGTTCTACGGACTAGAGGGCCCAGAAGAATGCACTGTGTCATACACTCGATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCCCCGACGCCAACCTCGTTTGCGTCCTGTGTCGATGACCACCAACCACCTCTACTGGCTTCTAAAGGAAAGGAGCCAGACACAGATTTCAGTTCCACAAGCACCACTAGCGCAACAGTTCAAGAATTGGGAGAATCCTTGGTTCTCAAGAACAAGGCTCCTAGATGGCACGAACAGCTTCAATGCTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCTTCTGTAAAGAATTTCCAACTTGTGGCCGATGTCGACCCAGCTCTCAATGTATCGGTTGAAGAACAAGAGAAGATAATCTTGCAGTTTGGTAAAATTGGCAAGGACATCTTCACAATGGATTACCGCTACCCGCTCTCCGCCTTCCAAGCCTTCGTAATCTGCTTGAGCAGCTTCGACACCAAACCAGCCTGTGAATAG 1239 46.17 MSFKSFFRELREMKDGLRIKPKQGGEGRNWRSRTRSHIAPDEVPPQPEAIQQGQWANLPPELLLDIIRRVEESETSWPARTVVLSCASVCKSWRNITKEVVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYFLYSGLVPSENESDKLLLAAKRIRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTKFTMYDSQPPVLSVVQQNNQINRRFHAKQVSPRMSACNYTVGTISYELNVLRTRGPRRMHCVIHSIPASCIQQGGNAPTPTSFASCVDDHQPPLLASKGKEPDTDFSSTSTTSATVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALNVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFVICLSSFDTKPACE 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50034842 50036596 - Lag0013414.1 Lac1g2922 596493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2922 412 CDD F-box_AtTLP-like 55 99 - -
Lac1g2922 412 Pfam Tub family 116 407 IPR000007 -
Lac1g2922 412 Gene3D Tubby Protein; Chain A 113 412 IPR025659 -
Lac1g2922 412 MobiDBLite consensus disorder prediction 20 38 - -
Lac1g2922 412 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515(InterPro)
Lac1g2922 412 PANTHER TUBBY-RELATED 46 411 - -
Lac1g2922 412 Gene3D - 48 101 - -
Lac1g2922 412 MobiDBLite consensus disorder prediction 20 47 - -
Lac1g2922 412 ProSitePatterns Tub family signature 1. 340 353 IPR018066 -
Lac1g2922 412 Pfam F-box-like 55 98 IPR001810 GO:0005515(InterPro)
Lac1g2922 412 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lac1g2922 412 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Lac1g2922 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Lac1g2922 412 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Lac1g2922 412 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lac1g2922 412 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Lac1g2922 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Lac1g2922 412 SUPERFAMILY Tubby C-terminal domain-like 104 412 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2922 Lac-Chr1:50034842 Lac8g1678 Lac-Chr8:34901823 3.30E-119 dispersed
Lac1g2922 Lac-Chr1:50034842 Lac5g2113 Lac-Chr5:39768262 1.40E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23348 PF01167 Tub 2.60E-102 CL0395 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2922 K19600 - csv:101221704 748.043