Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2924 ATGAACGATTTGATGACGAAATCGTTCCTAAGTTATGTGGAATTAAAGAAACAGGCACAGAGCGACACCGCAGATTCCTTATCCGCCGGCGGCGACTTCGACATCGAATCCGGCGGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGAACAAGTCGAGGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAATCGACATTCAGAAACTAAATCAAGAAGCCAAATCAACCCACAACGCCAAGATCCTCCGCGGATTAAGAGACCGAATCGACTCTGACATGGTCTCGATCCTCCGCAGAGCGAAACTCCTCAAAGAGAAATTGGCCTCTCTCGACCAATCCAACGCCGCCAACCGCCTGATCTCCGTTGCGTTCGGCGAAGGAACCGCCGTCGACAGAACGAGAACCTCAATCACCAACGGACTGAGAGTGAAATTGAGAGAAATGATGAACGAATTCCAGTCTCTGAGAGAGAAAGTGGTGGCGGATCACAAGGAAGATCTGAGAAGAAGGTACTTCGGAGCAAATGGGGAACAACCCAGTGAAGAACAGATCGAGAAGATCATGTCTGGGAGTTTGAAACTCGAATCATTCGGAGGAAAACTGAGCGAGACCGAGTCGGGGGACCGAGTCAGGCACGAGTCAGTGATGGACATACAGAGGAGTTTGAACAAGCTTCATCAAGTATTTCTGGACATGGCGATTCTGGTCGAGAGCCAAGGGGAGAAGGTGGAAGACATTGAAGAGAATGTGGCGAAAGGTGGGAGGTTCATCAATGGCGGCACTCGAAGCCTTTACTATGCGAACCAGATGAAGAGGAAGAACAAGAAGTGGGTGTATTGGGTTTGGAGTTTGATTTTTGTTATATTGCTTGTTTGCATTGTTGCTATGTTGGTTTGTTAG 924 48.05 MNDLMTKSFLSYVELKKQAQSDTADSLSAGGDFDIESGGQELNPTEEQNLSLFFEQVEEIKTQMEETTNLLIDIQKLNQEAKSTHNAKILRGLRDRIDSDMVSILRRAKLLKEKLASLDQSNAANRLISVAFGEGTAVDRTRTSITNGLRVKLREMMNEFQSLREKVVADHKEDLRRRYFGANGEQPSEEQIEKIMSGSLKLESFGGKLSETESGDRVRHESVMDIQRSLNKLHQVFLDMAILVESQGEKVEDIEENVAKGGRFINGGTRSLYYANQMKRKNKKWVYWVWSLIFVILLVCIVAMLVC 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50047686 50048609 - Lag0013416.1 Lac1g2924 596495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2924 307 SMART tSNARE_6 208 275 IPR000727 -
Lac1g2924 307 CDD SNARE_syntaxin1-like 219 272 - -
Lac1g2924 307 MobiDBLite consensus disorder prediction 23 42 - -
Lac1g2924 307 SUPERFAMILY t-snare proteins 49 268 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lac1g2924 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 213 275 IPR000727 -
Lac1g2924 307 CDD SynN 53 200 IPR006011 GO:0016020(InterPro)
Lac1g2924 307 Pfam Syntaxin 53 248 IPR006011 GO:0016020(InterPro)
Lac1g2924 307 Gene3D - 209 306 - -
Lac1g2924 307 FunFam Syntaxin 132 206 306 - -
Lac1g2924 307 SMART SynN_4 45 172 IPR006011 GO:0016020(InterPro)
Lac1g2924 307 Gene3D - 45 177 - -
Lac1g2924 307 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 47 178 - -
Lac1g2924 307 PANTHER SYNTAXIN 53 296 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2924 Lac-Chr1:50047686 Lac9g2066 Lac-Chr9:40297547 4.30E-31 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2924 K08486 - csv:101217836 526.939