Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2924 | ATGAACGATTTGATGACGAAATCGTTCCTAAGTTATGTGGAATTAAAGAAACAGGCACAGAGCGACACCGCAGATTCCTTATCCGCCGGCGGCGACTTCGACATCGAATCCGGCGGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGAACAAGTCGAGGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAATCGACATTCAGAAACTAAATCAAGAAGCCAAATCAACCCACAACGCCAAGATCCTCCGCGGATTAAGAGACCGAATCGACTCTGACATGGTCTCGATCCTCCGCAGAGCGAAACTCCTCAAAGAGAAATTGGCCTCTCTCGACCAATCCAACGCCGCCAACCGCCTGATCTCCGTTGCGTTCGGCGAAGGAACCGCCGTCGACAGAACGAGAACCTCAATCACCAACGGACTGAGAGTGAAATTGAGAGAAATGATGAACGAATTCCAGTCTCTGAGAGAGAAAGTGGTGGCGGATCACAAGGAAGATCTGAGAAGAAGGTACTTCGGAGCAAATGGGGAACAACCCAGTGAAGAACAGATCGAGAAGATCATGTCTGGGAGTTTGAAACTCGAATCATTCGGAGGAAAACTGAGCGAGACCGAGTCGGGGGACCGAGTCAGGCACGAGTCAGTGATGGACATACAGAGGAGTTTGAACAAGCTTCATCAAGTATTTCTGGACATGGCGATTCTGGTCGAGAGCCAAGGGGAGAAGGTGGAAGACATTGAAGAGAATGTGGCGAAAGGTGGGAGGTTCATCAATGGCGGCACTCGAAGCCTTTACTATGCGAACCAGATGAAGAGGAAGAACAAGAAGTGGGTGTATTGGGTTTGGAGTTTGATTTTTGTTATATTGCTTGTTTGCATTGTTGCTATGTTGGTTTGTTAG | 924 | 48.05 | MNDLMTKSFLSYVELKKQAQSDTADSLSAGGDFDIESGGQELNPTEEQNLSLFFEQVEEIKTQMEETTNLLIDIQKLNQEAKSTHNAKILRGLRDRIDSDMVSILRRAKLLKEKLASLDQSNAANRLISVAFGEGTAVDRTRTSITNGLRVKLREMMNEFQSLREKVVADHKEDLRRRYFGANGEQPSEEQIEKIMSGSLKLESFGGKLSETESGDRVRHESVMDIQRSLNKLHQVFLDMAILVESQGEKVEDIEENVAKGGRFINGGTRSLYYANQMKRKNKKWVYWVWSLIFVILLVCIVAMLVC | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 50047686 | 50048609 | - | Lag0013416.1 | Lac1g2924 | 596495 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2924 | 307 | SMART | tSNARE_6 | 208 | 275 | IPR000727 | - | |
Lac1g2924 | 307 | CDD | SNARE_syntaxin1-like | 219 | 272 | - | - | |
Lac1g2924 | 307 | MobiDBLite | consensus disorder prediction | 23 | 42 | - | - | |
Lac1g2924 | 307 | SUPERFAMILY | t-snare proteins | 49 | 268 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Lac1g2924 | 307 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 213 | 275 | IPR000727 | - | |
Lac1g2924 | 307 | CDD | SynN | 53 | 200 | IPR006011 | GO:0016020(InterPro) | |
Lac1g2924 | 307 | Pfam | Syntaxin | 53 | 248 | IPR006011 | GO:0016020(InterPro) | |
Lac1g2924 | 307 | Gene3D | - | 209 | 306 | - | - | |
Lac1g2924 | 307 | FunFam | Syntaxin 132 | 206 | 306 | - | - | |
Lac1g2924 | 307 | SMART | SynN_4 | 45 | 172 | IPR006011 | GO:0016020(InterPro) | |
Lac1g2924 | 307 | Gene3D | - | 45 | 177 | - | - | |
Lac1g2924 | 307 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 47 | 178 | - | - | |
Lac1g2924 | 307 | PANTHER | SYNTAXIN | 53 | 296 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2924 | Lac-Chr1:50047686 | Lac9g2066 | Lac-Chr9:40297547 | 4.30E-31 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g2924 | K08486 | - | csv:101217836 | 526.939 |