Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2959 ATGGCTAAGCTTGTGAGCTTTGTCTTTGTTCTTTCCCTTCTTGCCTTTGCTCCACTCTGTTTCTCTAGCAGGATTGGTGGCAATGGGTCTCTGTACCCGCAATATTATGACCATTCCTGCCCCAAAGCTAAGGAAATAGTGAAATCAGTGATGGCAAGGGCTTTTGCAAGGGAAGCTCGTATTGCTGCTTCTATCCTTAGACTTCACTTCCATGACTGTTTTGTTCAGGGGTGTGATGCATCTATACTACTGGATAGCAGTGGGAGCATCAGGAGTGAAAAGAATTCAAACCCAAATAGGAACTCGGCTAGAGGGTTTGAAGTGATTGATGAGATCAAATCTGCATTGGAGAAAGAGTGCCCACAAACTGTTTCTTGTGCTGATATCTTGGCTTTGGCTGCAAGAGATTCCACTGTCATTACGGGTGGACCCTTTTGGGAGGTTCCATTGGGAAGGAAGGACTCCAGAAGTGCGAGTTTGAGTGGCTCCAACAACAACATTCCAGCTCCAAACAGCACATTCCAAACCATTCTCAATAGATTCCAAAACCAAGGGCTTGACATCGTTGACGTCGTTGCCTTATCTGGAGGCCACACCATCGGAAATTCAAGGTGCACCAGCTTCAGGCAGAGGCTGTACAACCAGAACGGCAACGGACAGCCCGATAAAACCCTTCAGCAGTCGTACGCGGCCGAGCTCCGGAGCCGCTGCCCGAGATCCGGCGGCGACAACAACCTCTTTTTCCTGGACTTCGTCAGCCCGACCAAATTCGACAACAGCTACTTCAAGAACCTAGTTGGTTTCAAAGGCCTTCTCAACTCCGACCAAGTTCTCCTCACCCAAAACGACGCGTCGGCCAATTTGGTAAAGAAATATGCCGACGACAGCGAGCTGTTCTTCGAGCAATTCGCGAAATCTATGATCAAAATGAGCAAGATTTCCCCATTGACGGGCTCCAGTGGAGAGATCAGAAAGACTTGCAGGAAGATCAACAATTAA 999 48.35 MAKLVSFVFVLSLLAFAPLCFSSRIGGNGSLYPQYYDHSCPKAKEIVKSVMARAFAREARIAASILRLHFHDCFVQGCDASILLDSSGSIRSEKNSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVITGGPFWEVPLGRKDSRSASLSGSNNNIPAPNSTFQTILNRFQNQGLDIVDVVALSGGHTIGNSRCTSFRQRLYNQNGNGQPDKTLQQSYAAELRSRCPRSGGDNNLFFLDFVSPTKFDNSYFKNLVGFKGLLNSDQVLLTQNDASANLVKKYADDSELFFEQFAKSMIKMSKISPLTGSSGEIRKTCRKINN 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50399663 50401251 + Lag0013451.1 Lac1g2959 596530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2959 332 CDD secretory_peroxidase 31 330 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac1g2959 332 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 FunFam Peroxidase 34 176 - -
Lac1g2959 332 Gene3D Peroxidase, domain 2 168 311 - -
Lac1g2959 332 Pfam Peroxidase 47 295 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Lac1g2959 332 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601(InterPro)
Lac1g2959 332 PANTHER PEROXIDASE 72-RELATED 9 330 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 SUPERFAMILY Heme-dependent peroxidases 31 331 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 ProSiteProfiles Plant heme peroxidase family profile. 30 331 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2959 332 Gene3D - 35 331 - -
Lac1g2959 332 FunFam Peroxidase 168 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3028 Lac-Chr10:44846354 Lac1g2959 Lac-Chr1:50399663 7.80E-55 dispersed
Lac11g2378 Lac-Chr11:39969472 Lac1g2959 Lac-Chr1:50399663 2.30E-86 dispersed
Lac1g2959 Lac-Chr1:50399663 Lac8g2856 Lac-Chr8:45719962 7.10E-88 dispersed
Lac13g0167 Lac-Chr13:1179781 Lac1g2959 Lac-Chr1:50399663 1.30E-63 transposed
Lac13g0426 Lac-Chr13:2996718 Lac1g2959 Lac-Chr1:50399663 1.10E-75 transposed
Lac1g2959 Lac-Chr1:50399663 Lac5g2087 Lac-Chr5:39510460 8.60E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2959 K00430 - csv:101204648 584.719