Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g2963 | ATGGAATGGGTTTTGGGATTCTGGGTTTGGTTTGTGAGTGTTGTTTTAGGTTGGTTTTGGTTGAAGAAGAAGCTGCAGTTTATTCAAAACAAGGATGCAATTCCAAAAGGAAACCTGGGTTGGCCTCTCATTGGTGAAACCCTTCAATTCATTGCTTCTGGCTACTCTTCTCGTCCTGTCACCTTCATGGACAAACGCAAATCTCTGTACGGTAACGTGTTTAAAACCAACATTTTGGGGACACCCATCATAGTTTCCACTGATTCAGACGTGAATAAGGTGGTTTTACAGAACCATGGCAACATTTTTATCCCAGCTTACCCCAAATCAATTACTGAATTACTTGGCTCATTTTCAATTCTTCAAATGAATGGAAATGTTCAGAAAAGAGTTCATACAATCATTGGAGCTTTTCTTAGGTCTCCTCAGCTCAAAGCCCAAATCACTAGAGATATTCAAAACACCGTTAAACTAAGGCTTGCCAATTGGAATACCTCCCAATTAGTTTATGTCCAAACCGAAACCAAACAGATCACATTTGAAGTATTGGTGAAGGTGTTGATGAGTGTGGGACCCGGTGAAGATTTGAGGATTTTGAAAAGGGAATTTGAAGAGTTCATCAAAGGCTTGATTTGTATACCCATTAAACTACCTGGAACAAGGCTATATAAATCTTTGAAGGCGAGAGAGAAGCTGTTGAAAATAGTGAGAAAAATAGTGGAAGAGAGAAAATGGAGGGTGGAGGAGAAGGTTGCACCGAGGGATGCGGTGGACGTGCTGTTACAGGATCACGATGAGAGCCAAGGGCTGCCGTTGGATTTCATCAGCAGTCACATCTTAGAGCTGATGATCCCCGGCGAGGAGACGGTGCCCATGGCGATGACCCTCGCCGTCAAATTTCTCAGTGACTGCCCCCTCGCTCTAGCCCAAATGACGGAGGAGAATATGCAACTTAAGAAACAGAAGCTTGATTCTGGCCACGAGTATACGTGGACAGATTACATGTCTCTGCTATTTACTCAAAATGTGATTAGTGAAACGTTAAGAATGGCTAATATCATCAATGGGGTTTGGAGGAAAGCTCAAAAAGATGTGCAAATCAAAGGCTATTTAATACCACAAGGATGGTGCGTTTTGGCATCTTTTATTTCGGTTCATATGGATGAAAACAACTATGCAAACCCACATCAGTTTGATCCATGGAGATGGGAGGAAATTGCGTCTGCAAGTAACAATCATAACTTTACACCTTTTGGAGGGGGACAGAGGCTATGTCCCGGCATCGAACTCGCCCGGCTCGAAATCTCAATTTTCCTTCATCATCTTGTCACTACCTACAATGAAGATGAGAAGGAAGCTGCCAATTGCTATCACAACCTTAAGCTCTTGATTGGATTCAATCATCTCAACAACTTCGATATCGAGCTGTCGAGGAAATAA | 1440 | 42.5 | MEWVLGFWVWFVSVVLGWFWLKKKLQFIQNKDAIPKGNLGWPLIGETLQFIASGYSSRPVTFMDKRKSLYGNVFKTNILGTPIIVSTDSDVNKVVLQNHGNIFIPAYPKSITELLGSFSILQMNGNVQKRVHTIIGAFLRSPQLKAQITRDIQNTVKLRLANWNTSQLVYVQTETKQITFEVLVKVLMSVGPGEDLRILKREFEEFIKGLICIPIKLPGTRLYKSLKAREKLLKIVRKIVEERKWRVEEKVAPRDAVDVLLQDHDESQGLPLDFISSHILELMIPGEETVPMAMTLAVKFLSDCPLALAQMTEENMQLKKQKLDSGHEYTWTDYMSLLFTQNVISETLRMANIINGVWRKAQKDVQIKGYLIPQGWCVLASFISVHMDENNYANPHQFDPWRWEEIASASNNHNFTPFGGGQRLCPGIELARLEISIFLHHLVTTYNEDEKEAANCYHNLKLLIGFNHLNNFDIELSRK | 479 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 50416042 | 50420418 | + | Lag0013455.1 | Lac1g2963 | 596534 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g2963 | 479 | PRINTS | P450 superfamily signature | 425 | 436 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2963 | 479 | PRINTS | P450 superfamily signature | 342 | 353 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2963 | 479 | PRINTS | P450 superfamily signature | 140 | 153 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2963 | 479 | PRINTS | P450 superfamily signature | 416 | 425 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2963 | 479 | PANTHER | CYTOCHROME P450 26 | 33 | 446 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER) | |
| Lac1g2963 | 479 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 418 | 427 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac1g2963 | 479 | CDD | CYP90-like | 66 | 451 | - | - | |
| Lac1g2963 | 479 | PRINTS | E-class P450 group I signature | 415 | 425 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2963 | 479 | PRINTS | E-class P450 group I signature | 381 | 405 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2963 | 479 | PRINTS | E-class P450 group I signature | 425 | 448 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2963 | 479 | PRINTS | E-class P450 group I signature | 67 | 86 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2963 | 479 | PRINTS | E-class P450 group I signature | 274 | 291 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2963 | 479 | Pfam | Cytochrome P450 | 35 | 447 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2963 | 479 | SUPERFAMILY | Cytochrome P450 | 33 | 447 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2963 | 479 | Gene3D | Cytochrome P450 | 26 | 462 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2963 | 479 | FunFam | 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 | 24 | 461 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g2428 | Lac-Chr12:41363118 | Lac1g2963 | Lac-Chr1:50416042 | 4.40E-106 | dispersed | |
| Lac13g1107 | Lac-Chr13:9552769 | Lac1g2963 | Lac-Chr1:50416042 | 9.30E-89 | dispersed | |
| Lac1g2963 | Lac-Chr1:50416042 | Lac8g2547 | Lac-Chr8:43205763 | 1.50E-70 | dispersed | |
| Lac1g2963 | Lac-Chr1:50416042 | Lac4g2977 | Lac-Chr4:48035012 | 6.40E-138 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac1g2963 | K12637 | - | csv:101203911 | 762.296 |