Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2972 ATGTCTGGCTTTTTCACTTTAGGTGGCGGTGGAGGAGGAAGAGGAAGCGAAGACCAAGAAGACCAACAACACAACACCAACCGCCCCAACGAAATTGTTCACCCCGATAATTTGTTTTGGTACAAGGGCAACGTGGAGCTATGGCAGCAGCAGCAACAACAGCATCAACAAGAACAAGCTCTCTTCCAATCGCGCTCTCATCACACCAACAACCCTTACTCCTCCCCTCTAGGAGCCGCCCCTCGCCGGAGCTCCGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATCAGCTCCGGATCGGGCGGAGGAGGAATCAGCTGCCAAGACTGCGGCAACCAAGCGAAAAAAGACTGTAGCCATATGCGGTGCAGGACTTGCTGCAAGAGCCGAGGCTTCGCTTGCAATACCCATGTGAAAAGCACTTGGGTCCCTGCCGCGAAGCGTCGCGAGCGGCAGGAGAAACTGGCGGCCTTACAAAGCCACCACCAACTTCAACTCCATGGCGACACTAACAATCCGAAACGCCACAGAGATTATAACCCCACTTCCTCTTCTTCTCTTGCCTGCACTCTCATCCCCAACAACAACAACAACAACAACGCTTCTGGGTTGGAAATTGGGAATTTCCCGGCGGAGTTGAACTCCCCGGCTGTGTTCCGTTGCGTTCGTGTGAGCTCCGCCGACGATTCCGACGACCAATACGCTTATCAAACGGCGGTGAATATCGGAGGGCATGTTTTCAAGGGAATTCTATACGATCAAGGACCTGAAAATAATTATATTCCAGCGGGTGAGACCTCGTCCGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCACTGAATTTCATCGCTGGCGCCGCCGATGCCACCACCGCCAGCGGTGGTTCCTCCGTCGCATTACCCTTGCTTGATCCTTCTTCCTTATATTCAACGCCGCTCAATAGCTACATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA 993 52.97 MSGFFTLGGGGGGRGSEDQEDQQHNTNRPNEIVHPDNLFWYKGNVELWQQQQQQHQQEQALFQSRSHHTNNPYSSPLGAAPRRSSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFACNTHVKSTWVPAAKRRERQEKLAALQSHHQLQLHGDTNNPKRHRDYNPTSSSSLACTLIPNNNNNNNASGLEIGNFPAELNSPAVFRCVRVSSADDSDDQYAYQTAVNIGGHVFKGILYDQGPENNYIPAGETSSGGGGSSSGVQPLNFIAGAADATTASGGSSVALPLLDPSSLYSTPLNSYMAGTQFFLPPRS 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50470992 50472280 - Lag0013464.1 Lac1g2972 596543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2972 330 NCBIfam putative zinc finger domain, LRP1 type 108 150 IPR006510 -
Lac1g2972 330 Pfam Domain of unknown function (DUF702) 106 259 - -
Lac1g2972 330 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 324 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Lac1g2972 330 MobiDBLite consensus disorder prediction 161 185 - -
Lac1g2972 330 MobiDBLite consensus disorder prediction 49 99 - -
Lac1g2972 330 MobiDBLite consensus disorder prediction 1 34 - -
Lac1g2972 330 NCBIfam LRP1 C-terminal domain 211 258 IPR006511 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2972 Lac-Chr1:50470992 Lac9g2786 Lac-Chr9:45974644 1.30E-36 dispersed
Lac1g2972 Lac-Chr1:50470992 Lac2g0177 Lac-Chr2:1334392 3.70E-52 wgd
Lac1g2972 Lac-Chr1:50470992 Lac5g2081 Lac-Chr5:39421541 2.20E-49 wgd
Lac1g2972 Lac-Chr1:50470992 Lac6g0467 Lac-Chr6:3845594 1.80E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23350 PF05142 DUF702 3.30E-66 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2972 K27807 - csv:101207689 483.026