Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2978 ATGGAGGCACCTTTGAAGATGGGTCTCATGAAGGAGATGAGTTTCAAATCCAGCCCCAAGCTTTATCTGGACGAATTTTGGCCTTCCAATCCCCAAAACGCTGCATCCCCTTCCTCCGATTACATTTTTGTAGACCAACTCCTCAACTTTTCAACTGAAGAAGATGGCTTTATTGAAGAAGAAGCAGAGGGTCAAGAAAAAAAGAACCACTCCTCTGTTTCTGCTCCCCTGCAACTGCAACAGCACCACGAGAGCGACGAAAATTCCAACCACAGCTCCACCATTTCCTCCGAAGATGATTTCTGGTCTGTTTCTTCAAGAGATTTTGAAGACCTCGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCACCCTGCTCTGTTTTCTTCACAGAGAAACCCAATAATTACCAAAAGGAAACAACCCACCAATTCCAGCCGCTCCAGAAATTTGGGCCTAATCTCAAGACCCCATTTCCCTCAAAGCCCAGAAGCAAGCGGGCGAAAATCTCAGGCCGAGTCTGGTCCTTTACGAATTCAATTTCTTCTCCATCGTTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATTCGGCGGTTGAAGGCTCCGGCAGGGTCCAGCCTTCGCGGCGGTGCAGCCATTGCGGCGTTCAAAAAACCCCACAGTGGCGAGCCGGTCCACTGGGAGCAAAGACGCTGTGTAATGCGTGCGGCGTCCGGTTTAAATCCGGTCGACTTTTTCCCGAATATAGACCGGCTTGCAGCCCGACTTTTTCAAGCGAAATCCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCTGTCCGGTCCGGATCCGACCGTAGGAGTAGTGTAG 903 50.61 MEAPLKMGLMKEMSFKSSPKLYLDEFWPSNPQNAASPSSDYIFVDQLLNFSTEEDGFIEEEAEGQEKKNHSSVSAPLQLQQHHESDENSNHSSTISSEDDFWSVSSRDFEDLEWLSHLVADSTQEEYSAAPPCSVFFTEKPNNYQKETTHQFQPLQKFGPNLKTPFPSKPRSKRAKISGRVWSFTNSISSPSLYSPPAKKPKKNSAVEGSGRVQPSRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRLFPEYRPACSPTFSSEIHSNHHRKVLEMRRKKETEKPLSGPDPTVGVV 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50508340 50509242 + Lag0013470.1 Lac1g2978 596549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2978 300 FunFam GATA transcription factor 210 291 - -
Lac1g2978 300 MobiDBLite consensus disorder prediction 156 175 - -
Lac1g2978 300 Gene3D - 211 290 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac1g2978 300 MobiDBLite consensus disorder prediction 193 219 - -
Lac1g2978 300 Pfam GATA zinc finger 219 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2978 300 MobiDBLite consensus disorder prediction 54 100 - -
Lac1g2978 300 PANTHER GATA TRANSCRIPTION FACTOR 44 285 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Lac1g2978 300 MobiDBLite consensus disorder prediction 280 300 - -
Lac1g2978 300 PIRSF Txn_fac_GATA_plant 10 292 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Lac1g2978 300 MobiDBLite consensus disorder prediction 69 83 - -
Lac1g2978 300 ProSiteProfiles GATA-type zinc finger domain profile. 213 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2978 300 SMART GATA_3 213 267 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2978 300 CDD ZnF_GATA 218 266 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2978 300 ProSitePatterns GATA-type zinc finger domain. 219 244 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2978 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2978 Lac-Chr1:50508340 Lac4g2914 Lac-Chr4:47516069 1.60E-33 dispersed
Lac1g2978 Lac-Chr1:50508340 Lac5g2072 Lac-Chr5:39260596 6.10E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23351 PF00320 GATA 1.50E-16 CL0167 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2978 - - - 0.0