Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2978 | ATGGAGGCACCTTTGAAGATGGGTCTCATGAAGGAGATGAGTTTCAAATCCAGCCCCAAGCTTTATCTGGACGAATTTTGGCCTTCCAATCCCCAAAACGCTGCATCCCCTTCCTCCGATTACATTTTTGTAGACCAACTCCTCAACTTTTCAACTGAAGAAGATGGCTTTATTGAAGAAGAAGCAGAGGGTCAAGAAAAAAAGAACCACTCCTCTGTTTCTGCTCCCCTGCAACTGCAACAGCACCACGAGAGCGACGAAAATTCCAACCACAGCTCCACCATTTCCTCCGAAGATGATTTCTGGTCTGTTTCTTCAAGAGATTTTGAAGACCTCGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCACCCTGCTCTGTTTTCTTCACAGAGAAACCCAATAATTACCAAAAGGAAACAACCCACCAATTCCAGCCGCTCCAGAAATTTGGGCCTAATCTCAAGACCCCATTTCCCTCAAAGCCCAGAAGCAAGCGGGCGAAAATCTCAGGCCGAGTCTGGTCCTTTACGAATTCAATTTCTTCTCCATCGTTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATTCGGCGGTTGAAGGCTCCGGCAGGGTCCAGCCTTCGCGGCGGTGCAGCCATTGCGGCGTTCAAAAAACCCCACAGTGGCGAGCCGGTCCACTGGGAGCAAAGACGCTGTGTAATGCGTGCGGCGTCCGGTTTAAATCCGGTCGACTTTTTCCCGAATATAGACCGGCTTGCAGCCCGACTTTTTCAAGCGAAATCCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCTGTCCGGTCCGGATCCGACCGTAGGAGTAGTGTAG | 903 | 50.61 | MEAPLKMGLMKEMSFKSSPKLYLDEFWPSNPQNAASPSSDYIFVDQLLNFSTEEDGFIEEEAEGQEKKNHSSVSAPLQLQQHHESDENSNHSSTISSEDDFWSVSSRDFEDLEWLSHLVADSTQEEYSAAPPCSVFFTEKPNNYQKETTHQFQPLQKFGPNLKTPFPSKPRSKRAKISGRVWSFTNSISSPSLYSPPAKKPKKNSAVEGSGRVQPSRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRLFPEYRPACSPTFSSEIHSNHHRKVLEMRRKKETEKPLSGPDPTVGVV | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 50508340 | 50509242 | + | Lag0013470.1 | Lac1g2978 | 596549 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2978 | 300 | FunFam | GATA transcription factor | 210 | 291 | - | - | |
Lac1g2978 | 300 | MobiDBLite | consensus disorder prediction | 156 | 175 | - | - | |
Lac1g2978 | 300 | Gene3D | - | 211 | 290 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Lac1g2978 | 300 | MobiDBLite | consensus disorder prediction | 193 | 219 | - | - | |
Lac1g2978 | 300 | Pfam | GATA zinc finger | 219 | 252 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac1g2978 | 300 | MobiDBLite | consensus disorder prediction | 54 | 100 | - | - | |
Lac1g2978 | 300 | PANTHER | GATA TRANSCRIPTION FACTOR | 44 | 285 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Lac1g2978 | 300 | MobiDBLite | consensus disorder prediction | 280 | 300 | - | - | |
Lac1g2978 | 300 | PIRSF | Txn_fac_GATA_plant | 10 | 292 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Lac1g2978 | 300 | MobiDBLite | consensus disorder prediction | 69 | 83 | - | - | |
Lac1g2978 | 300 | ProSiteProfiles | GATA-type zinc finger domain profile. | 213 | 249 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac1g2978 | 300 | SMART | GATA_3 | 213 | 267 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac1g2978 | 300 | CDD | ZnF_GATA | 218 | 266 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac1g2978 | 300 | ProSitePatterns | GATA-type zinc finger domain. | 219 | 244 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac1g2978 | 300 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 214 | 275 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2978 | Lac-Chr1:50508340 | Lac4g2914 | Lac-Chr4:47516069 | 1.60E-33 | dispersed | |
Lac1g2978 | Lac-Chr1:50508340 | Lac5g2072 | Lac-Chr5:39260596 | 6.10E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23351 | PF00320 | GATA | 1.50E-16 | CL0167 | Lac | TF |
Pathway information
