Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2978 ATGGAGGCACCTTTGAAGATGGGTCTCATGAAGGAGATGAGTTTCAAATCCAGCCCCAAGCTTTATCTGGACGAATTTTGGCCTTCCAATCCCCAAAACGCTGCATCCCCTTCCTCCGATTACATTTTTGTAGACCAACTCCTCAACTTTTCAACTGAAGAAGATGGCTTTATTGAAGAAGAAGCAGAGGGTCAAGAAAAAAAGAACCACTCCTCTGTTTCTGCTCCCCTGCAACTGCAACAGCACCACGAGAGCGACGAAAATTCCAACCACAGCTCCACCATTTCCTCCGAAGATGATTTCTGGTCTGTTTCTTCAAGAGATTTTGAAGACCTCGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCACCCTGCTCTGTTTTCTTCACAGAGAAACCCAATAATTACCAAAAGGAAACAACCCACCAATTCCAGCCGCTCCAGAAATTTGGGCCTAATCTCAAGACCCCATTTCCCTCAAAGCCCAGAAGCAAGCGGGCGAAAATCTCAGGCCGAGTCTGGTCCTTTACGAATTCAATTTCTTCTCCATCGTTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATTCGGCGGTTGAAGGCTCCGGCAGGGTCCAGCCTTCGCGGCGGTGCAGCCATTGCGGCGTTCAAAAAACCCCACAGTGGCGAGCCGGTCCACTGGGAGCAAAGACGCTGTGTAATGCGTGCGGCGTCCGGTTTAAATCCGGTCGACTTTTTCCCGAATATAGACCGGCTTGCAGCCCGACTTTTTCAAGCGAAATCCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCTGTCCGGTCCGGATCCGACCGTAGGAGTAGTGTAG 903 50.61 MEAPLKMGLMKEMSFKSSPKLYLDEFWPSNPQNAASPSSDYIFVDQLLNFSTEEDGFIEEEAEGQEKKNHSSVSAPLQLQQHHESDENSNHSSTISSEDDFWSVSSRDFEDLEWLSHLVADSTQEEYSAAPPCSVFFTEKPNNYQKETTHQFQPLQKFGPNLKTPFPSKPRSKRAKISGRVWSFTNSISSPSLYSPPAKKPKKNSAVEGSGRVQPSRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRLFPEYRPACSPTFSSEIHSNHHRKVLEMRRKKETEKPLSGPDPTVGVV 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50508340 50509242 + Lag0013470.1 Lac1g2978 596549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2978 300 FunFam GATA transcription factor 210 291 - -
Lac1g2978 300 MobiDBLite consensus disorder prediction 156 175 - -
Lac1g2978 300 Gene3D - 211 290 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac1g2978 300 MobiDBLite consensus disorder prediction 193 219 - -
Lac1g2978 300 Pfam GATA zinc finger 219 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2978 300 MobiDBLite consensus disorder prediction 54 100 - -
Lac1g2978 300 PANTHER GATA TRANSCRIPTION FACTOR 44 285 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Lac1g2978 300 MobiDBLite consensus disorder prediction 280 300 - -
Lac1g2978 300 PIRSF Txn_fac_GATA_plant 10 292 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Lac1g2978 300 MobiDBLite consensus disorder prediction 69 83 - -
Lac1g2978 300 ProSiteProfiles GATA-type zinc finger domain profile. 213 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2978 300 SMART GATA_3 213 267 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2978 300 CDD ZnF_GATA 218 266 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2978 300 ProSitePatterns GATA-type zinc finger domain. 219 244 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2978 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2978 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2978 Lac-Chr1:50508340 Lac4g2914 Lac-Chr4:47516069 1.60E-33 dispersed
Lac1g2978 Lac-Chr1:50508340 Lac5g2072 Lac-Chr5:39260596 6.10E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g1069 . 81 371 C2C2-Gata Transcription Factor Family AT5G25830 53.1 1.1e-69 261.2
Lac5g2072 . 42 315 C2C2-Gata Transcription Factor Family AT3G51080 51.1 1.3e-54 211.1
Lac1g2978 . 108 284 C2C2-Gata Transcription Factor Family AT4G36240 51.4 5.2e-40 162.2
Lac5g0347 . 1 520 C2C2-Gata Transcription Factor Family AT4G17570 54.0 1.9e-135 480.3
Lac11g2336 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.4 7.1e-135 478.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23351 PF00320 GATA 1.50E-16 CL0167 Lac TF