Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g2981 | ATGCCACTCTTTTTCACTCTCCCTCTTTTGTTTCTTCTGGCCTTCCTCTTCAGATTCCGGCGAAAACTTCCCTATCCACCTGGCCCAAAAGGCTTCCCCTTCATCGGCAACATGCTCATGATGGACCACCTCACCCACCGTGGGCTCGCCAACCTCGCAAAGCGCTACGGCGGAATCTTCCACATGCGCATGGGCTTCCTTCACATGGTTGCCGTCTCCAACCCCGACGTCGCCCGCCAAGTTCTCCAGGTCCACGATAACATTTGTTCTAATCGCCCTGCCACCATCGCCATAAGTTACTTGACGTACGACCGCGCTGACATGGCCTTTGCTCACTACGGCCCTTTCTGGCGGCAGATGCGTAAGGTTTGCGTTATGAAGTTGTTCAGCCGCAAGCGAGCCGAGTCGTGGGCGTCTGTTCGAGATGAGGTGGACACCGCCGTTAGAAAGCTCGCCGGCCGAACGGGAACCGCCGTGAATATCGGTGAGCTCGTGTTTGAATTGACGAGAGATATTATTTATAGAGCTGCGTTTGGGACGAGCGCAGTGCAAGGTCAGGATGAGTTTATAAGAATCTTGCAAGAATTCTCGAGACTCTTTGGAGCTTTCAATATCGCCGATTTTATTCCAAGTTTGGGCTGGATTGACCCTCAAGGCTTGAACAACAGGCTGGTCAAAGCTCGTCGATCGCTTGATAAGTTCATTGACACCATAATCGACCAACACATGGAGAATAAAAGAAAGAGAACGTTGTCAAATGTGAAAGATGATGAAATTGACACTGATATGGTGGACGAATTATTGGCTTTTTATGATGAACATGCAACAGTTAATGAATCAAACGATCAACAAAACACCATCAAGCTCAACCGTGACAACATCAAAGCTATCATCATGGACGTTATGTTTGGTGGAACGGAGACGGTAGCGTCGGCGATAGAGTGGGCCATGTCGGAGTTAATGAGAAGCCCAGAAGATCTAAAGAAAGCCCAACAAGAACTCGCTGAAGTCGTTGGTTTCGAACGACGTGTCGAAGAAGCCGACTTCGAGAATTTGACCTTTTTGAAATGCTGCCTCAAGGAGACTCTTCGGCTCCACCCGCCGATCCCGCTCCTCCTCCACGAGACGGCGGAGGACTTGGTCGTCTCCGGCTACTTCATTCCGGCGAAATCTCGGGTCATGGTCAACGCGTGGGCCATCGGGAGGGACCCGGCCTCGTGGGACGACGCCGAAACATTCCGGCCGGCGAGGTTTCTCGAGCAGGGGGTGCCGGATTTTAAAGGGAGCAATTTCGAGTTTATTCCGTTCGGCTCGGGTCGTCGGTCTTGCCCCGGAATGCAACTGGGTCTGTACGGGCTCGAGATGGCGGTGGCCCACTTGCTGCATTGTTTCACATGGGAATTGCCCGACGGGATGAAGCCGAGCGAGATGGACATGGGCGACGTTTTCGGGTTGACCGCTCCGAGAGCGACCCGACTTGTTGCTGTGCCCACTAAGCGGGTTCTGTGTCCACTCGTTTGA | 1521 | 52.73 | MPLFFTLPLLFLLAFLFRFRRKLPYPPGPKGFPFIGNMLMMDHLTHRGLANLAKRYGGIFHMRMGFLHMVAVSNPDVARQVLQVHDNICSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKVCVMKLFSRKRAESWASVRDEVDTAVRKLAGRTGTAVNIGELVFELTRDIIYRAAFGTSAVQGQDEFIRILQEFSRLFGAFNIADFIPSLGWIDPQGLNNRLVKARRSLDKFIDTIIDQHMENKRKRTLSNVKDDEIDTDMVDELLAFYDEHATVNESNDQQNTIKLNRDNIKAIIMDVMFGGTETVASAIEWAMSELMRSPEDLKKAQQELAEVVGFERRVEEADFENLTFLKCCLKETLRLHPPIPLLLHETAEDLVVSGYFIPAKSRVMVNAWAIGRDPASWDDAETFRPARFLEQGVPDFKGSNFEFIPFGSGRRSCPGMQLGLYGLEMAVAHLLHCFTWELPDGMKPSEMDMGDVFGLTAPRATRLVAVPTKRVLCPLV | 506 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 50538967 | 50541102 | + | Lag0013473.1 | Lac1g2981 | 596552 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g2981 | 506 | PRINTS | P450 superfamily signature | 434 | 443 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2981 | 506 | PRINTS | P450 superfamily signature | 304 | 321 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2981 | 506 | PRINTS | P450 superfamily signature | 357 | 368 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2981 | 506 | Pfam | Cytochrome P450 | 26 | 488 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2981 | 506 | PRINTS | E-class P450 group I signature | 53 | 72 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2981 | 506 | PRINTS | E-class P450 group I signature | 443 | 466 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2981 | 506 | PRINTS | E-class P450 group I signature | 77 | 98 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2981 | 506 | PRINTS | E-class P450 group I signature | 396 | 420 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2981 | 506 | PRINTS | E-class P450 group I signature | 293 | 310 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2981 | 506 | PRINTS | E-class P450 group I signature | 433 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2981 | 506 | PRINTS | E-class P450 group I signature | 313 | 339 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2981 | 506 | PRINTS | E-class P450 group I signature | 356 | 374 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2981 | 506 | FunFam | Cytochrome P450 84A1 | 18 | 499 | - | - | |
| Lac1g2981 | 506 | SUPERFAMILY | Cytochrome P450 | 18 | 500 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2981 | 506 | PANTHER | CYTOCHROME P450 84A1-RELATED | 3 | 505 | IPR053062 | GO:0004497(PANTHER) | |
| Lac1g2981 | 506 | CDD | CYP71-like | 55 | 493 | - | - | |
| Lac1g2981 | 506 | Gene3D | Cytochrome P450 | 18 | 500 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2981 | 506 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 436 | 445 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g2981 | Lac-Chr1:50538967 | Lac4g1424 | Lac-Chr4:32646177 | 7.30E-193 | dispersed | |
| Lac1g2981 | Lac-Chr1:50538967 | Lac1g2871 | Lac-Chr1:49662443 | 7.50E-105 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac1g2981 | K09755 | - | csv:101205783 | 833.558 |