Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2983 ATGAGGATACTTTGTGATTCCTGTGAAAGTGCTGCAGCGACTTTGTTTTGTGCTGCTGATGAAGCTGCTCTCTGCGCAGCCTGTGATGCTAAGGTGCACATGTGCAATAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTCGCAAATCCGAGTGAAGTTTCTCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAAATAGATGGCAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTGGGAGGCAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGAGAGTTGAGTTTCCAGGGGATAAACAAAATGATATCAAGGACCTAAATGTTGTAGCGATGGAACAGGTTGAGGCAGTGAGAGGCCAAAATCAAGATGGGGCTGAGAAGCAGGAAAACTTGAGGGTCTCGGGCGTTAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGGGGTAATAAAGTGATTGATTTGAACATTTAG 498 45.18 MRILCDSCESAAATLFCAADEAALCAACDAKVHMCNKLASRHVRVGLANPSEVSRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDKQNDIKDLNVVAMEQVEAVRGQNQDGAEKQENLRVSGVKDYSNGDGHSKRGNKVIDLNI 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50557601 50558421 - Lag0013475.1 Lac1g2983 596554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2983 165 MobiDBLite consensus disorder prediction 127 165 - -
Lac1g2983 165 Pfam B-box zinc finger 4 41 IPR000315 GO:0008270(InterPro)
Lac1g2983 165 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270(InterPro)
Lac1g2983 165 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Lac1g2983 165 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lac1g2983 165 CDD Bbox1_BBX-like 56 95 IPR049808 -
Lac1g2983 165 FunFam B-box zinc finger protein 19 2 92 - -
Lac1g2983 165 Gene3D Classic Zinc Finger 1 93 - -
Lac1g2983 165 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lac1g2983 165 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270(InterPro)
Lac1g2983 165 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 131 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2983 Lac-Chr1:50557601 Lac9g1749 Lac-Chr9:37162144 2.80E-45 dispersed
Lac5g2128 Lac-Chr5:39879952 Lac1g2983 Lac-Chr1:50557601 4.50E-55 transposed
Lac1g2983 Lac-Chr1:50557601 Lac2g0172 Lac-Chr2:1303501 2.10E-16 wgd
Lac1g2983 Lac-Chr1:50557601 Lac6g0470 Lac-Chr6:3872291 1.60E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23353 PF00643 zf-B_box 5.60E-06 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2983 - - - 0.0