Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2983 ATGAGGATACTTTGTGATTCCTGTGAAAGTGCTGCAGCGACTTTGTTTTGTGCTGCTGATGAAGCTGCTCTCTGCGCAGCCTGTGATGCTAAGGTGCACATGTGCAATAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTCGCAAATCCGAGTGAAGTTTCTCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAAATAGATGGCAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTGGGAGGCAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGAGAGTTGAGTTTCCAGGGGATAAACAAAATGATATCAAGGACCTAAATGTTGTAGCGATGGAACAGGTTGAGGCAGTGAGAGGCCAAAATCAAGATGGGGCTGAGAAGCAGGAAAACTTGAGGGTCTCGGGCGTTAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGGGGTAATAAAGTGATTGATTTGAACATTTAG 498 45.18 MRILCDSCESAAATLFCAADEAALCAACDAKVHMCNKLASRHVRVGLANPSEVSRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDKQNDIKDLNVVAMEQVEAVRGQNQDGAEKQENLRVSGVKDYSNGDGHSKRGNKVIDLNI 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50557601 50558421 - Lag0013475.1 Lac1g2983 596554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2983 165 MobiDBLite consensus disorder prediction 127 165 - -
Lac1g2983 165 Pfam B-box zinc finger 4 41 IPR000315 GO:0008270(InterPro)
Lac1g2983 165 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270(InterPro)
Lac1g2983 165 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Lac1g2983 165 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lac1g2983 165 CDD Bbox1_BBX-like 56 95 IPR049808 -
Lac1g2983 165 FunFam B-box zinc finger protein 19 2 92 - -
Lac1g2983 165 Gene3D Classic Zinc Finger 1 93 - -
Lac1g2983 165 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lac1g2983 165 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270(InterPro)
Lac1g2983 165 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 131 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2983 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2983 Lac-Chr1:50557601 Lac9g1749 Lac-Chr9:37162144 2.80E-45 dispersed
Lac5g2128 Lac-Chr5:39879952 Lac1g2983 Lac-Chr1:50557601 4.50E-55 transposed
Lac1g2983 Lac-Chr1:50557601 Lac2g0172 Lac-Chr2:1303501 2.10E-16 wgd
Lac1g2983 Lac-Chr1:50557601 Lac6g0470 Lac-Chr6:3872291 1.60E-16 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0573 . 1 339 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.2e-83 307.8
Lac3g0282 . 5 374 C2C2-CO-like Transcription Factor Family AT5G57660 51.1 8.2e-66 248.4
Lac9g1940 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 50.6 3.1e-92 336.3
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.6 2.0e-86 317.0
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 1.6e-83 307.4
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 1.6e-83 307.4
Lac4g1427 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 56.1 3.7e-52 203.0
Lac9g1735 . 15 216 C2C2-CO-like Transcription Factor Family AT1G75540 51.6 3.0e-46 183.3
Lac5g2128 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.6 6.4e-56 214.5
Lac1g2983 . 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 70.5 9.0e-50 194.1
Lac9g1749 . 1 197 C2C2-CO-like Transcription Factor Family AT2G21320 51.3 6.4e-48 188.0
Lac5g2128 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 9.5e-58 220.7
Lac9g1749 . 1 196 C2C2-CO-like Transcription Factor Family AT4G38960 55.1 1.3e-51 200.3
Lac1g2983 . 1 164 C2C2-CO-like Transcription Factor Family AT4G38960 59.8 6.2e-49 191.4
Lac4g1427 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.1 5.8e-55 211.8
Lac6g0470 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 52.7 2.0e-47 186.8
Lac9g1735 . 15 209 C2C2-CO-like Transcription Factor Family AT4G39070 54.2 1.8e-43 173.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011988 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23353 PF00643 zf-B_box 5.60E-06 No_clan Lac TF