Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3004 ATGGAAAAAACGCCGTTGCTCGCCGGAAACTTCGGCCTGCGTCGTAGCTCGCAAAGTTTTCACGGCGAGGATTTTGTCCTCCTTTTATACCCTTTTTTCTTATATTGGTTCGGGCCCGGGGCATCCTCGTGGTCGTGGCTCGTGGAGTGCACGATTTGGTGCTGGATTTTGTGGTATAGTGGAGATGTTGGCATTTCCCTTTGTCTTTGTCTTTCTCTGTTGGACGAATCAAAGGAATTAAGCTCTGAGATTTATTTACTCGCTGCTTTGCTCTGTGTAAGACCCTTTTTTGTTTTTGGGATCGCCATGGAGCAGTGGAAGACTGGGGATTTCTCTCAATCTATTGTTGCAGCTGATTTAGTTCCTTCCTCGTCTCTTCAGCCGCAGCCTCTCTCTGTGTCCTCGAATCGCCACCATAACAGCCAGCTTCCTGAATCCAGGTTAAGAACAGATGCGGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAGAAGGCAGATCGTGAAAAATTGAGGAGAGACAGATTGAATGAACACTTTCTTGAGCTAGGCAACACATTAGATCCAGATAGGCCCAAAAATGACAAGGCTACCATCCTTACAGACACCATCCAGATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAGGCTGACTATGAAGCTCTTTCTGAAGAATCACGTGAGCTAACTCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAATCAGATATTGAAAATCTAAATGCCCAGTATCAACAAAGACTGAGAGTCATGTTTCCCTGGGCTACAATGGATCCTTCAGTGGTTATGGGGCCCCCATATTCATACCCCGTTCCCGTTCCCGTTCCCCCAGGACCAATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGCAATCAGAATCCCGGTGCTATTCCTAACCCCTGTTCAACGTTTGTCCCATATACTGCTGCTGCCAATCATCCGATTGAACAGCCCTCTGCCCAATATGCGTCCAATTCACATGTCTCCAGCAAACAAGATTCCAGAAGTAAGTCATCAGATCAGCAAAGGCGTAGTAATGCAGAAAGATGCGACGAATCTAATGATGTAGCAACAGACCTTGAACTTAAGATGCCTGGATCTTCAACGCAACAGGATGCATCCTCTGGAAGTAAGAAAGGTAAGCAGTCACAGAGGAAAGAAAAAAGTGTCACCGATTGTAGTTCTTCGAGTAGGTTTTCTTCATCCCCAGTTCTTCAAGATAGCTCCTCTAACAGTGTTAGCGACATCCCGAAACAGAACAACTGA 1311 45.46 MEKTPLLAGNFGLRRSSQSFHGEDFVLLLYPFFLYWFGPGASSWSWLVECTIWCWILWYSGDVGISLCLCLSLLDESKELSSEIYLLAALLCVRPFFVFGIAMEQWKTGDFSQSIVAADLVPSSSLQPQPLSVSSNRHHNSQLPESRLRTDAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYEALSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPIEQPSAQYASNSHVSSKQDSRSKSSDQQRRSNAERCDESNDVATDLELKMPGSSTQQDASSGSKKGKQSQRKEKSVTDCSSSSRFSSSPVLQDSSSNSVSDIPKQNN 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50752125 50757032 - Lag0013496.1 Lac1g3004 596575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3004 436 Pfam Helix-loop-helix DNA-binding domain 161 211 IPR011598 GO:0046983(InterPro)
Lac1g3004 436 Coils Coil 200 255 - -
Lac1g3004 436 MobiDBLite consensus disorder prediction 335 436 - -
Lac1g3004 436 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 230 IPR036638 GO:0046983(InterPro)
Lac1g3004 436 SMART finulus 166 216 IPR011598 GO:0046983(InterPro)
Lac1g3004 436 MobiDBLite consensus disorder prediction 408 436 - -
Lac1g3004 436 MobiDBLite consensus disorder prediction 378 393 - -
Lac1g3004 436 MobiDBLite consensus disorder prediction 127 147 - -
Lac1g3004 436 CDD bHLH_AtILR3_like 165 239 - -
Lac1g3004 436 Gene3D - 159 243 IPR036638 GO:0046983(InterPro)
Lac1g3004 436 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 210 IPR011598 GO:0046983(InterPro)
Lac1g3004 436 MobiDBLite consensus disorder prediction 348 373 - -
Lac1g3004 436 MobiDBLite consensus disorder prediction 127 141 - -
Lac1g3004 436 PANTHER TRANSCRIPTION FACTOR BHLH121 124 434 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3004 Lac-Chr1:50752125 Lac9g1781 Lac-Chr9:37540132 9.50E-56 dispersed
Lac1g3004 Lac-Chr1:50752125 Lac2g1358 Lac-Chr2:11426874 1.70E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23357 PF00010 HLH 9.40E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3004 - - - 0.0