Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3035 ATGGCTTTCTTTGCTGTGGCATTCTCACACTTTGCAATTCTTTTGCTGTCTATTCTGTCTTTGGGAAGTTCACTGAGCTTAGACTACTACGAGAAGACATGTCCCGGTGTCGACTTTATTGTTACTAAAGCTGTCAAGAATGCAGCTTACAAAGACAAGACTGTTCCTGCTGCACTCCTCCGGATGCACTTTCATGACTGCTTTATAAGGGGTTGTGATGCATCTGTACTGCTGAACTCAGTAGGGAACAACAAAGCAGAGAAAGATGGGCCACCTAATCTGTCTTTGCACTCATTTTTTGTGATTGACAACGCGAAGAAAGAACTGGAATCCTATTGCCCCGGCGTTGTCTCTTGTGCTGATATCTTGGCTCTGGCTGCAAGGGATGCAGTTGTGCTTTCTGGAGGTCCAACATGGGATGTTCCTAAAGGAAGAAAGGATGGAAGGATATCAAAGGCCAGTGAAACAATACAATTGCCATCTCCAAGCTTCAACATTTCTCAGCTGCAACAGAGCTTCTCCCAAAGGGGATTATCCTTGGACGACCTGGTTGCTCTTTCAGGAGGCCACACCTTAGGATTTGCTCATTGCTCATCCTTTGAAGGTAGAATCCGCAACTTCAGTCCAGCCAGCAACGTCGACCCTGAAATGAATCCGTCCTTCGCAGCAAGTCTAAGAAACATGTGCCCAGTAAACAACAAGGCAAAAAATGCTGGCTCTAACATGGATACTTCTCCAACCACATTCGACAACAATTACTATAGACTGATACTCCAAAAGAAGGGCCTGTTTGCTGCTGATCAAGCTCTGCTCAACTTTCCCAAGACCAAGAATCTTGTTTATCAGTTTGCTAGCTCAAAGGAAGCTTTTAACCGTGCATTTGTTAATTCTATGATCAAGATGAGTAGCATCACTGGAGGTCAAGAGATCAGGAAGAATTGTAGGGCAGTGAACTAA 957 44.62 MAFFAVAFSHFAILLLSILSLGSSLSLDYYEKTCPGVDFIVTKAVKNAAYKDKTVPAALLRMHFHDCFIRGCDASVLLNSVGNNKAEKDGPPNLSLHSFFVIDNAKKELESYCPGVVSCADILALAARDAVVLSGGPTWDVPKGRKDGRISKASETIQLPSPSFNISQLQQSFSQRGLSLDDLVALSGGHTLGFAHCSSFEGRIRNFSPASNVDPEMNPSFAASLRNMCPVNNKAKNAGSNMDTSPTTFDNNYYRLILQKKGLFAADQALLNFPKTKNLVYQFASSKEAFNRAFVNSMIKMSSITGGQEIRKNCRAVN 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51014104 51015440 - Lag0013527.1 Lac1g3035 596606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3035 318 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 FunFam Peroxidase 160 301 - -
Lac1g3035 318 CDD secretory_peroxidase 28 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac1g3035 318 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Lac1g3035 318 Gene3D Peroxidase, domain 2 160 301 - -
Lac1g3035 318 Gene3D - 28 318 - -
Lac1g3035 318 SUPERFAMILY Heme-dependent peroxidases 25 318 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 PANTHER PEROXIDASE 25-RELATED 20 314 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lac1g3035 318 Pfam Peroxidase 41 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 ProSiteProfiles Plant heme peroxidase family profile. 24 318 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g3035 318 FunFam Peroxidase 28 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0621 Lac-Chr12:6575020 Lac1g3035 Lac-Chr1:51014104 4.70E-73 dispersed
Lac1g3035 Lac-Chr1:51014104 Lac5g2884 Lac-Chr5:47092470 7.10E-93 dispersed
Lac1g3035 Lac-Chr1:51014104 Lac6g0525 Lac-Chr6:4368056 2.20E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3035 K00430 - csv:101217954 595.119