Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3042 ATGTTATCCAGCTTGATGAACTTTCTGAGGGCTTGCTGGCTGCCGTCCTCGGACAACATCGTACACAGTGGTTCGGATTCAGCAGGCCGTCATGAAGGCCTACTATGGTACAAAGATATTGGACAGCATATGAATGGTGAATTTTCAATGGCTGTCGTCCAGGCCAATAACTTGCTTGAGGATCAGAGCCAGATCGAATCGGGTTCGTTGAGCTTACTTGAAACCGGGCCATATGGAACTTTTATTGGTGTCTATGATGGTCATGGTGGGCCTGAAGCGTCAAATTACGTATATGATAATCTTTTCCAGCATCTAAAAAGGTTCACCTCAGAACAACAATCAATGTCATCTGATGTGATAAAGAAAGCATTTCAAGCTACAGAGGAAGGGTTTATTTCTCTAGTGACTAAACAATGGACAATGAAGCCCCAAATTGCAGCTGTTGGTTCATGCTGCCTGGTGGGCGTGATCTGTGGTGGCACCCTTTACATAGCCAACCTTGGTGATTCCCGTGCTGTGCTGGGAAGGCTTGTTCGGGCAACTGAGGAGGTTATTGCCGTGCAGCTATCAGCAGAGCATAATGTGAGCATAGAATCTGTCAGAAGGGAGATGCATTCTCTGCACCCAGATGACTCGCATATAGTAGTTTTGAAGCATAATGTATGGCGAGTAAAGGGCTTAATACAGGTTTCCAGATCTATCGGTGATGCGTATCTAAAGAGGGCAGAATTCAACAAGGAACCCTTGTATGCTAAGTTTAGGCTTCGTGAACCATTCACTCGGCCAATATTGAGCTGTGAACCATCAATTTCGGTGCATGAACTTCAACCACATGATCAATTCATCATATTTGCCTCTGATGGCCTGTGGGAGCACATTAGCAATCAGCAGGCTGTGGATATTATTAGAAATCACCCGCACAATGGAAGTGCTAAGAGGTTGGTAAAAGCTGCTATGCAGGAAGCAGCCAAGAAACGAGAAATGCGATATTCAGATTTGAAGGAAATCGACCGTGGTGTCCGCCGCCATTTTCACGATGACATCACAGTCATAGTTGTATTTCTCGACTCAAATCTTGTGAGCAGAGCGAGCTCGGTCGGAGGCCCAACTACGTCTTTGAGAGGGAGTGGTGTTGTCTTACCAACAAAATCTCTAGCCCCTTGTGCCACACCTGCAGAACTTTAA 1185 45.82 MLSSLMNFLRACWLPSSDNIVHSGSDSAGRHEGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSLLETGPYGTFIGVYDGHGGPEASNYVYDNLFQHLKRFTSEQQSMSSDVIKKAFQATEEGFISLVTKQWTMKPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRLVRATEEVIAVQLSAEHNVSIESVRREMHSLHPDDSHIVVLKHNVWRVKGLIQVSRSIGDAYLKRAEFNKEPLYAKFRLREPFTRPILSCEPSISVHELQPHDQFIIFASDGLWEHISNQQAVDIIRNHPHNGSAKRLVKAAMQEAAKKREMRYSDLKEIDRGVRRHFHDDITVIVVFLDSNLVSRASSVGGPTTSLRGSGVVLPTKSLAPCATPAEL 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51058272 51060245 + Lag0013534.1 Lac1g3042 596613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3042 394 ProSiteProfiles PPM-type phosphatase domain profile. 66 355 IPR001932 -
Lac1g3042 394 SMART PP2C_4 41 353 IPR001932 -
Lac1g3042 394 FunFam Phosphatase 2C family protein 36 365 - -
Lac1g3042 394 CDD PP2Cc 48 355 IPR001932 -
Lac1g3042 394 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Lac1g3042 394 PANTHER PROTEIN PHOSPHATASE 41 354 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac1g3042 394 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Lac1g3042 394 Gene3D - 37 364 IPR036457 -
Lac1g3042 394 Pfam Protein phosphatase 2C 80 324 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3042 Lac-Chr1:51058272 Lac4g1279 Lac-Chr4:30786009 2.30E-149 dispersed
Lac10g2623 Lac-Chr10:40361221 Lac1g3042 Lac-Chr1:51058272 4.10E-119 transposed
Lac1g3042 Lac-Chr1:51058272 Lac5g0081 Lac-Chr5:679443 3.60E-171 wgd
Lac1g3042 Lac-Chr1:51058272 Lac9g1843 Lac-Chr9:38204733 2.00E-182 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3042 K01102 - csv:101219696 737.258