Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3046 ATGGCGGAAAGTTCAGAAGAGGTCTATCTCCATGGCGATCTCGACCTCAAAATCTTTGAGGCTAGCCAGTTGCCTAATATGGACATTATATCGGAGCGTCTTCGTCGTTGCTTCACTGCCTGTGGTACTCTCGACTACTCTGCCATTAAATCCGTCGGAACCAACTCCCGCTCTGCCGCCGGTGAGGGGAAAGTCCATCGCCGCCATGGCAAAATCATCACCAGCGACCCATATGTTACCGTCCGGGTCCCTCAAGCCACCGTCGCTCGGACTCGCGTCATAAAGAATTCCCAGAATCCCAATTGGAACGAGCATTTCGTTATCCCTCTTGCACAGAAAATGGCCGAGTTGGAATTCCAGGTGAAAGACGACGATGTCTTTGGCGCTGAAGTTATGGGGACGGTCAAATTCCCTGCTCAGACAATTGCCTCCGGCGAGACAATTAGCGGGTGGTTTCCTGTGCTTGGCTCAAATGGCAAGCCACCGAAGCCCGGTACATCACTCAGAGTCGAAATGAAGTTCACCTCGGTTGAAAAAAATCCGGTATATCGACACGGTATTGCAGGAGATCCTGAGCATAAGGGTGTGCGGCACACTTATTTTCCTGTCAGGAAAGGGAGCTCCGTTAGATTGTATCAAGATGCTCATGTGCCTGATGGGATGCTACCGCAGATTGAATTGGATGGAGGGAATGTTTATAGACAAGAAAAATGTTGGGAGGATATTTGCTATGCCATATCGGAGGCTCATCATATGATTTATATCGTCGGATGGTCGGTCTATCATAAGGTGAGGCTGGTTAGAGAGCCAAGCAGGCCGTTGCCGCGAGGCGGGGATTTGACTCTTGGTGAACTGCTCAAATACAAATCAGAAGAGGGTGTCCGAGTTTTGATGATGGTTTGGGATGATAAGACTTCTCATGATAAGTTCTTCATCAACACGGCAGGATTGATGCAGACACATGACGAGGAAACCCGAAAATTTTTCAAGCATTCTTCTGTTATCTGTGTGCTCTCACCTCGCTATCCAAGTGGCAAGCTAAGTTATGTAAAACAAAAGGTTGTAGGGACTGTCTTCACACACCATCAAAAGTGTGTCCTTGTTGATACACAGGGATATGGTAATAATAGAAAGATAACTGCATTTCTTGGAGGTCTTGATCTCTGTGATGGTCGTTATGATACACCTGGGCATCGATTGTTCCATGACCTTGACACAGTATTCAAGGAGGATTTTCATAATCCTACAATTCCCCCTGGAACCAATGCTCCAAGGCAACCATGGCATGACTTGCACTGTCGGATTGATGGGCCAGCGGCATATGACTTGCTTATAAACTTTGAGCAACGTTGGAATAGAGCCACAAGATGGACAGAGTTTGGCCTACGGTGCAAGAGAATTTCTCACTGGCATGATGCCTTAATAAAGATTGAGCGCATATCATGGATACTAAGCCCTCACCTGACTGTCTTAGCTGATGGTTCAATAAAAGTTCCAGAGGATGACCCTAAAGTATATGTTTCAAAGGAAGAAGATCCTGGGAACTGGCATGTTCAGATTTTTCGATCTATTGACTCTGGATCAGTAAAAGGATTTCCAAAAGATGTCCACCTCGCCGAGTCGCAGAACCTTGTTTGTGCAAAAAACTTGGCTGTAGAGAAAAGCATTGAAATGGCATATATCCAGGCTATTAGATCGGCACAACATTTCATTTATATTGAAAATCAGTATTTTATTGGATCATCGTATGGATGGCCGGGATATAAAAATGCCGGGGCTGATAATCTCATTCCCATGGAGTTGGCCCTTAAGATTGCAAGCAAAATAAGAGCCAAGGAAAGATTTGTTGTATATATTATCATACCAATGTGGCCTGAGGGAGATCCGAAGAGTGGTCCCATGCAAGAGATTCTTTATTGGCAGGGACAAACGATGCAAATGATGTATGACATTGTTGCAAGTGAACTGAAGTCATCAGAGCAACCAGATTTGACTCCTCTAGACTATCTAAATTTCTACTGCCTTGGTAAACGGGAAGAAATTCCTGAGAATGGACCGACCACTGATGCTGCAACGGTATCTAATTCACTAAAACATAAACGGTTTATGATTTACGTTCATGCCAAGGGGATGATAGTTGATGATGAATATGTAATTGTTGGGTCTGCAAATATTAACCAAAGATCTATGGCTGGGTCGAAGGACACTGAGATAGCCATGGGCGCCTATCAGCCGCATCACTCGTGGGCAAAGAATAAGAAACACCCACACGGTCAGATTTACGGGTACAGAATGTCGTTATGGAGCGAGCATCTCGGGATGCTCGATCCATGTTTTGAGGAGCCAGAAACTTTGGAATGTGTGAGAAGAGTCAATGGGATTGCTGAGGATAACTGGAAGCGATTCGTGGCAGATGAATTCACGACATTGCAGGGCCACCTTCTCAAGTATCCGGTGCTCGTGGACGGTGACGGGAAAGTCAATTCTCTGCCTGGACATGAAAACTTCCCTGATGTAGGGGGGAAGATAATAGGGTCTCATTCAACTGCAATTCCTGATGTTGTGACCACATAG 2574 45.61 MAESSEEVYLHGDLDLKIFEASQLPNMDIISERLRRCFTACGTLDYSAIKSVGTNSRSAAGEGKVHRRHGKIITSDPYVTVRVPQATVARTRVIKNSQNPNWNEHFVIPLAQKMAELEFQVKDDDVFGAEVMGTVKFPAQTIASGETISGWFPVLGSNGKPPKPGTSLRVEMKFTSVEKNPVYRHGIAGDPEHKGVRHTYFPVRKGSSVRLYQDAHVPDGMLPQIELDGGNVYRQEKCWEDICYAISEAHHMIYIVGWSVYHKVRLVREPSRPLPRGGDLTLGELLKYKSEEGVRVLMMVWDDKTSHDKFFINTAGLMQTHDEETRKFFKHSSVICVLSPRYPSGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPGHRLFHDLDTVFKEDFHNPTIPPGTNAPRQPWHDLHCRIDGPAAYDLLINFEQRWNRATRWTEFGLRCKRISHWHDALIKIERISWILSPHLTVLADGSIKVPEDDPKVYVSKEEDPGNWHVQIFRSIDSGSVKGFPKDVHLAESQNLVCAKNLAVEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADNLIPMELALKIASKIRAKERFVVYIIIPMWPEGDPKSGPMQEILYWQGQTMQMMYDIVASELKSSEQPDLTPLDYLNFYCLGKREEIPENGPTTDAATVSNSLKHKRFMIYVHAKGMIVDDEYVIVGSANINQRSMAGSKDTEIAMGAYQPHHSWAKNKKHPHGQIYGYRMSLWSEHLGMLDPCFEEPETLECVRRVNGIAEDNWKRFVADEFTTLQGHLLKYPVLVDGDGKVNSLPGHENFPDVGGKIIGSHSTAIPDVVTT 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51104677 51110070 + Lag0013538.1 Lac1g3046 596617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3046 857 ProSiteProfiles C2 domain profile. 1 152 IPR000008 -
Lac1g3046 857 Pfam Phospholipase D C terminal 777 846 IPR024632 -
Lac1g3046 857 SUPERFAMILY Phospholipase D/nuclease 553 787 - -
Lac1g3046 857 SUPERFAMILY Phospholipase D/nuclease 197 460 - -
Lac1g3046 857 Gene3D Endonuclease Chain A 525 755 - -
Lac1g3046 857 SMART pld_4 357 392 IPR001736 GO:0003824(InterPro)
Lac1g3046 857 SMART pld_4 702 729 IPR001736 GO:0003824(InterPro)
Lac1g3046 857 SMART C2_3c 13 151 IPR000008 -
Lac1g3046 857 PIRSF PLD_plant 1 857 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Lac1g3046 857 Gene3D Endonuclease Chain A 226 467 - -
Lac1g3046 857 CDD C2_plant_PLD 8 175 - -
Lac1g3046 857 Pfam Phospholipase D Active site motif 704 729 IPR001736 GO:0003824(InterPro)
Lac1g3046 857 Pfam C2 domain 74 153 IPR000008 -
Lac1g3046 857 FunFam Phospholipase D delta 229 473 - -
Lac1g3046 857 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 176 IPR035892 -
Lac1g3046 857 PANTHER PHOSPHOLIPASE D 9 844 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lac1g3046 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 392 IPR001736 GO:0003824(InterPro)
Lac1g3046 857 Gene3D C2 domain 11 184 IPR035892 -
Lac1g3046 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 702 729 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0888 Lac-Chr11:9601803 Lac1g3046 Lac-Chr1:51104677 4.00E-42 dispersed
Lac1g3046 Lac-Chr1:51104677 Lac5g0583 Lac-Chr5:6529221 2.00E-243 dispersed
Lac1g3046 Lac-Chr1:51104677 Lac11g0678 Lac-Chr11:7033408 4.10E-196 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3046 K01115 - csv:101217251 1625.14