Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3049 ATGGATTCCTGTATGCCTCAAGACTATGGCTCGCTGTTGGGGCTCGCCCCTGCAGAACAATCAATTCCCTACTGGAACAACAAGGCCGACAATGCATGGCAGCTCACGGCAGCCACCATGGTCGGCCTCCAAACCGTTCCGGGGCTGGTCATCCTCTACGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCCGCCTTCATGGCCCTCTATGGCTTCGCTGCCGTGCTCGTCTGTTGGGTGTTGTGGGCACATCGTATGGCATTTGGTGACCGATTGTTCTGGATCGTCGGTAAGCCTGCCACAGCACTGTCTGAAAGCTACCTTCTTTCACCGTCTACACAAGGCTGCTTTCCAATGGCTGACTACGTGTTTTTCCAGTTCGCTTTCGCGGCCATTACTGTCGTGTTGCTTGCCGGGTCCTTGCTGGGAAGGATGAACTTTTGTGCATGGATGCTTTTTGTTCCAATGTGGCTAACTTTTTGTTACACTGTTGGGGCTTTCAGTATATGGGGGGGTGGGTTTATTCGGGATTACCTGATTGATTACGCGGGCGGCTATGTCATTCATCTTTCTTCTGGGGTGGCTGGTTTCACTGCTGCCTACTGGGTCGGGCCACGACACTCCCAGGACAGGCAAAACTTCCCACCAAACAACATACTGCACATGGTTGGTGGCGCGGGGTTTCTTTGGCTGGGTTGGACTGGATTCAATGGAGGAGCTCCATTTGCAGCAGGTCAGATTACATCGCTAGCCATTTTGAACACACATGTCTGCACTGCGACGAGTCTCTTGATCTGGGTTTCAATGGACATCATAGTATACAAGAAAAGCTCTGTGATTGGTGCAGTTCAAGGGATTATCACTGGCCTTGTCTGCATCACTCCGGGTGCAGGGCTTGTGGATACAGTTGCAGCTGTGGTGATGGGCATTCTGGCTGGTTTGGTGCCATGGTACACCATGATGGTGCTGCATAGGAAGCTTGCATTCCTTCAATGTGTCGACGATACATTGGGCGTCTTCCACACACACGCAGTGGCTGGTTCCATGGGAGGACTCCTCACAGGTCTCTTTGCCAAACCCAGCCTTCTGAGAATGCTGTATCCGGATTCTCTATATGGTCCCGGCTTCCTATACGCCATATCTGATAGAAGGCTCAAAGATGGTCTCAAGCAAATTGGAATCCAGTTTGCCGGAGCAGTGTTTATTACTCTTTGGAATGCCATCTTCACCAGCATTATCTGTTACCTGATTAGCCATATTGTTAAATTAAGGATGAAAGAAGAGGACCTGGAGATTGGTGATGATGCTGCTCATGGAGAAGAACCCTACGCATTGTGGGGCGACGGGGAGAAGATGCCATCCTCATTTCGTCTTCCGCACACCCCTAGGTTCCCTTCATTATGCATGCGGGATTAA 1419 50.88 MDSCMPQDYGSLLGLAPAEQSIPYWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFAAVLVCWVLWAHRMAFGDRLFWIVGKPATALSESYLLSPSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFCAWMLFVPMWLTFCYTVGAFSIWGGGFIRDYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSQDRQNFPPNNILHMVGGAGFLWLGWTGFNGGAPFAAGQITSLAILNTHVCTATSLLIWVSMDIIVYKKSSVIGAVQGIITGLVCITPGAGLVDTVAAVVMGILAGLVPWYTMMVLHRKLAFLQCVDDTLGVFHTHAVAGSMGGLLTGLFAKPSLLRMLYPDSLYGPGFLYAISDRRLKDGLKQIGIQFAGAVFITLWNAIFTSIICYLISHIVKLRMKEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRLPHTPRFPSLCMRD 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51121888 51123535 - Lag0013541.1 Lac1g3049 596620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3049 472 NCBIfam ammonium transporter 30 444 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac1g3049 472 Pfam Ammonium Transporter Family 32 444 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac1g3049 472 Gene3D Ammonium transporter AmtB like domains 12 447 IPR029020 -
Lac1g3049 472 PANTHER AMMONIUM TRANSPORTER MEP2 22 454 IPR001905 GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Lac1g3049 472 SUPERFAMILY Ammonium transporter 25 426 - -
Lac1g3049 472 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac1g3049 472 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005886(InterPro)
Lac1g3049 472 PRINTS Rhesus blood group protein signature 127 143 IPR002229 GO:0005886(InterPro)
Lac1g3049 472 PRINTS Rhesus blood group protein signature 307 325 IPR002229 GO:0005886(InterPro)
Lac1g3049 472 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005886(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3253 Lac-Chr10:46555656 Lac1g3049 Lac-Chr1:51121888 1.40E-148 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3049 K03320 - csv:101218977 891.723