Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3089 ATGTGGATATGGCAGAAGGATATGAAGCGGTGTCTCTTGTGCATGGAGACATGGGTTGGGGGTCAGGCTAAGCCGGTGTCGTCTCTCCACTCTAGCCGAAGGTTTTGCAATCAGGGGAGGTTTTCTGTTCCTTTCCTTGGGTTTTATGTTTGGTTTTCGTTTACTTTGTGGAGATTTCATGTTTACGTTGGGGGTGGTAGGCCTATAGGCTTCAAGCCACTATGGAACAAACCCACTATTATAGAAGGCATGTTGGCGAAGGATTGGAAGGCTAGATGCATTCTGATGTTCTCCACTGATTGTCTGCTCAGCGTTTACTATACTTTCTTCAGAGAGGGGAGGGTGTTTATCGAACTGGCGGTTTGGCTTAGTGGGAGGATGGTTCTCCGGTTGTGGAGTTTTGATTCCGCTGTTGTCTTTCTGTTATGTCTGTTTCAGAGCGTTTTGCCGTTGATATGTAAGATTTCACTTCCACAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAGATCTCGTTTTGGGGCTCTTTCTGTTCTCTGTTCACCGGAATCTATGGCGTTTTCCGATGAGAACAATCCCAACTTGATCAAGCCCACTGGGTTTCTTCCAGGAGGAGGGTTGGAGAAGACTGGTGGGAGGGCTTTTGGCCAGGAGATCAGTAGAATTAATAATCGAAGAGCTCTTAATGTTATTAACCAGAATTCTGTCGTGAATCAAGCTTACCCTTGTGTTGTTAACAAGAGAGTTCTCTCAGGAAAGCAAGAGATCTGTGAGAAGAAGCAGGTCGATCCATTCCATAGACCGATTACGAGGAAGTTTGCTGCTCAAATTGCGAGTAGTCAACAGCTTCATCAGCCACAAGAAAATAATAAGCCTAACTCATTTCTTACAAACTCAAATGCATTTGGACATTCCATATTTGTAGACGAGGATTGTAAAACAGCAGAAAATGACCATCCAGTTCCCATGTTCTTGGAGAAATCCGAACCATCATTGCCTCAAGAAGCAAGCCAAATGGAGGAGGTTGAGATGGAGGACATTGCAGAAGACGACGACCCGGTAATCGACATCGATCGTGTCGATTCCGAGAACCCGCTTGCCGTTGTCGACTATGTGGACGATCTCTACACACACTACAGAAAAATAGAGAATTCAAGCTGTGTTGCTCCAAATTACATGACAAAACAGTTTGACATTAATGAGAAGATGAGAGCCATTCTAATTGACTGGCTTATAGAGGTGCATGACAAGTTTGATCTCATGGGAGAAACATTGTTTCTCACTGTGAATCTGATAGACAGATTTTTGTCACAAAAAACAGTTGTGAGGAAGAAGCTTCAGCTGGTTGGTTTGGTTTCTATGCTCTTAGCTTGCAAATATGAGGAAGTTTCTGTCCCTGTTGTGGGTGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAAAAGAAGTTCTTGAAATGGAGACAGTGATGCTCAACTGTCTGCAGTTCAACATGTCAGTTCCCACACCCTTTGTTTTCCTTCAAAGGTTCCTTAAAGCTGCTCAATCTGACAAAAAGCTCGAGCTAATGGCATTCTTCTTGATCGAGCTCTCGCTCGTGGAGTATGAAATGCTGAGATTTTCGCCCTCTCTGCTAGCAGCGGCGGCGACTTACACAGCTCAATGTACTCTCACCGGAGTCAGGGGGTGGAGCCGGACCTGCGAGTGGCATTCCAGCTACTCAGAAGATCAGCTCCTAGAATGCTCCAGACTGATGGTGGGATTCCACCAAAAGGCGGCGACCGGGAAGCTCACCGGAGTTCATAGGAAGTACTGTACATCAAAATTTAACTACACGGCAAAATGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAATAG 1884 44.64 MWIWQKDMKRCLLCMETWVGGQAKPVSSLHSSRRFCNQGRFSVPFLGFYVWFSFTLWRFHVYVGGGRPIGFKPLWNKPTIIEGMLAKDWKARCILMFSTDCLLSVYYTFFREGRVFIELAVWLSGRMVLRLWSFDSAVVFLLCLFQSVLPLICKISLPQSSSSSSSSSSRSRFGALSVLCSPESMAFSDENNPNLIKPTGFLPGGGLEKTGGRAFGQEISRINNRRALNVINQNSVVNQAYPCVVNKRVLSGKQEICEKKQVDPFHRPITRKFAAQIASSQQLHQPQENNKPNSFLTNSNAFGHSIFVDEDCKTAENDHPVPMFLEKSEPSLPQEASQMEEVEMEDIAEDDDPVIDIDRVDSENPLAVVDYVDDLYTHYRKIENSSCVAPNYMTKQFDINEKMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLSQKTVVRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSRKEVLEMETVMLNCLQFNMSVPTPFVFLQRFLKAAQSDKKLELMAFFLIELSLVEYEMLRFSPSLLAAAATYTAQCTLTGVRGWSRTCEWHSSYSEDQLLECSRLMVGFHQKAATGKLTGVHRKYCTSKFNYTAKCEPAHFLLQTQQ 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51370896 51379425 - Lag0013581.1 Lac1g3089 596660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3089 627 SMART cyclin_7 506 588 IPR013763 -
Lac1g3089 627 SMART cyclin_7 409 493 IPR013763 -
Lac1g3089 627 PANTHER CYCLINS 345 606 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lac1g3089 627 Gene3D - 374 614 - -
Lac1g3089 627 SUPERFAMILY Cyclin-like 363 499 IPR036915 -
Lac1g3089 627 MobiDBLite consensus disorder prediction 277 296 - -
Lac1g3089 627 SUPERFAMILY Cyclin-like 501 619 IPR036915 -
Lac1g3089 627 FunFam G2/mitotic-specific cyclin-1 496 614 - -
Lac1g3089 627 FunFam G2/mitotic-specific cyclin 388 495 - -
Lac1g3089 627 Pfam Cyclin, C-terminal domain 502 618 IPR004367 -
Lac1g3089 627 Pfam Cyclin, N-terminal domain 374 500 IPR006671 -
Lac1g3089 627 ProSitePatterns Cyclins signature. 404 435 IPR048258 -
Lac1g3089 627 SMART Cyclin_C_2 502 619 IPR004367 -
Lac1g3089 627 CDD CYCLIN_AtCycB-like_rpt1 352 497 - -
Lac1g3089 627 Gene3D - 388 500 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3089 Lac-Chr1:51370896 Lac2g0092 Lac-Chr2:703334 5.10E-135 dispersed
Lac1g3089 Lac-Chr1:51370896 Lac2g0633 Lac-Chr2:4734814 4.50E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3089 K21777 - csv:101216622 798.119