Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3096 ATGATTCACCAACACCAAAAAGACTCCACTATGATGAAATTCGCAACACGGGTCTTGGAATGGCTATTGTTATCGATCGAAATGGAGGGGAAGCGTGCGATTTCTGAGAGCTATATTTTGGGCCCCAAGATCAGCGTTGATGGATTCTCTCCAGCAGGACCACTGAGCCGAGAATTTCAACTCTCTTTCAAACGTTCTGAAGGTAGCTCAGGGCTTAAGATTGGATTATATTTGAGGAATTGTGATTATCTAATTCACAATGAGGATTATTTGCATTCTAGTATTGATGCTTCTCTTCAGCGGGAGTTCCTCAATTGGAGATGGTACAAATCCTTGCGTTTCATGGAGACTAAGACTATGGCCATAATTGGTCCTCAAAACTCTGTAACTGCTCATGTAATATCTCATATTGCAAATGAGCTCCAAGTCCCTCTATTGTCATTTTCAGCAACAGATCCCACGCTGTCGTCACTTCAGTTTCCTTTCTTTATCAGAACTTCACAGAATGATCTGTATCAGATGGCTGCAGTCGCTGAAATAGTTGATTACTTTCAATGGAGAGAGGTGATTGCCATTTTTGTTGATGATGATCATGGTAGAAACGGTATTGCTGCATTGGGGGATCAACTTAATGAGAAAAGATGTAAGATCTCATTGAAAGTACCATTGAGGCCTGATGCAAGTCGAGACGAGGTCACTGATGCACTTGTTAAGGTGGCTTTAACGGAGTCTCGGATACTTGTTGTTCACACTTATGAGACCACAGGTATGATGGTGCTGAATGTGGCTCAATATCTTGGATTGACTGAACCTGGGTATGTGTGGATAGCCACTAATTGGCTTTCGTTGCTACTCGACACGAATTCTCCTCTTCCTTCTGTTTCTATGGAAAATATTCAAGGACTCGTTGCTTTGCGGCTTTATACACCAGATTCTGCACTCAAAAGGAAATTTGTTTTGAGGTGGACCAATTTGACTAATGGAAAATCATCAAGTGGCCCACTCGGACTGAGTACTTACGGATTATATGCTTATGATACTGTTTGGATGCTTGCTCATGCAATAAATTCATTTCTTAATGAAGGTGGAAATCTTTCATTTTCAAATCTTTCCAAGTCAAGTGGGACTGGTGTTGGGGCTTTGAATTTGAACTCTATGAGCATCTTCAATGGTGGGAAGACACTACTTCACAAAATTTTGGACGTCAATTTTACTGGCATAACAGGCCCAGTTGAGTTCACTCCAGACAGGGACTTAATTCGCCCTGCATTTGAAGTGATCAATATAATCGGCACAGGGGAAAGGAGACTTGGTTATTGGTGTAACTATTCTGGCTTGTCGATTGTTCCTCCTGAAACCCTTTACTCGAAACCACCTAATCGATCCAGTTCAAATCAAAAGCTATACGATGTGGTATGGCCTGGACAAGCAACAAAGAAACCTCGTGGGTGGGCATTTCCAAACAGTGGAAGACACTTGAGAATCGGAGTCCCTAGACGAGTCAGTTATCAAGAATTTGTCTCACAAGTAGAAGGAACTGACATGTTCAGTGGCTACTGCGTTGATGTCTTCACTGCAGCAATCAACATATTGCCTTACGCAGTCCCATATAAGTTAATTCCTTTTGGGGATGGCCATACTAATCCAAGTGCAACCGAGCTTGTTCGGCTAATCACAACCGGAGTCTTTGATGCAGCAATAGGTGACATTGCAATCATCACAAACCGAACCAGGATGGCAGATTTTACACAACCGTATATCGAGTCTGGCTTAGTAGTCGTAGCCCCAGTCAAGAAGTCGAATTCTAGTGCTTGGGCCTTTTTACGGCCGTTCACTCCAAAGATGTGGTGTATTACTGCCGTTTCTTTTATTGTAGTAGGAGCAGTTGTTTGGATTTTGGAGCATAGGATAAATGATGATTTTCGTGGACCTCCGAAGAGACAAATTATTACTATTCTATGGTTCAGCTTTTCAACTCTATTCTTCTCTCATCGGGAAAACACAGTCAGTACCCTCGGTCGCTTCGTGCTGCTCATATGGTTATTTGTTGTTCTTATTATCAACTCGAGCTACACTGCAAGCTTGACCTCTATCCTTACAGTTCAACAACTTTCTTCTTCTGTCAAAGGGATTGAAACTTTGGTTTCAAACACTGACCCAATTGGCTACCAGCAGGGTTCATTCGCTCGAAACTACTTGATTGAGGAACTCGGCATTCACGAGTCGAGACTTGTTCCCCTCATCTCAGCAGAACACTATGTTAAAGCCTTGAATGATGGCCCAAAGAAGAATGGTGTTGCTGCTATTATCGATGAGCGAGCATATGTAGAGCTCTTCCTTTCAACCCATTGCGAATACAGTATTGTTGGCCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCAGCGTGACTCTCCTTTAGCAGTCGACATGTCCACAGCTATTCTAAGACTGTCAGAAAATGGGGATCTTCAAAGGATCCATGATAAATGGTTGATGAAAAGTGCCTGCACATCACAGGCCTCCAAATTTGAGGTGGATCGACTTCAGCTCAATAGCTTTTGGGGACTTTTTCTAATATGTGGATTAGCCTGCTTGCTCGCTCTATTGATATACCTCTTTCTAACGGTGCGCCAATATAGTGAGCATTACTCTGAAGAACTCGGGTCTTCTGAGCAAACTTCCCGATCTGCAAGCCTGCAGAGATTTCTTTCTTTTGCAGATGAAAAGGAAGACGTCTTCAGGAGTCGATCTAAGCGAAAACAGATGCAGGAGGCTTCAATTAGAAGCATGAATGGAGAAAATTCAAAAGGCAGTTCAAGAAAATTTGGCCATGGTGATGCTAATGGTATTGATGCTGGAGAATAG 2871 42.63 MIHQHQKDSTMMKFATRVLEWLLLSIEMEGKRAISESYILGPKISVDGFSPAGPLSREFQLSFKRSEGSSGLKIGLYLRNCDYLIHNEDYLHSSIDASLQREFLNWRWYKSLRFMETKTMAIIGPQNSVTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAEIVDYFQWREVIAIFVDDDHGRNGIAALGDQLNEKRCKISLKVPLRPDASRDEVTDALVKVALTESRILVVHTYETTGMMVLNVAQYLGLTEPGYVWIATNWLSLLLDTNSPLPSVSMENIQGLVALRLYTPDSALKRKFVLRWTNLTNGKSSSGPLGLSTYGLYAYDTVWMLAHAINSFLNEGGNLSFSNLSKSSGTGVGALNLNSMSIFNGGKTLLHKILDVNFTGITGPVEFTPDRDLIRPAFEVINIIGTGERRLGYWCNYSGLSIVPPETLYSKPPNRSSSNQKLYDVVWPGQATKKPRGWAFPNSGRHLRIGVPRRVSYQEFVSQVEGTDMFSGYCVDVFTAAINILPYAVPYKLIPFGDGHTNPSATELVRLITTGVFDAAIGDIAIITNRTRMADFTQPYIESGLVVVAPVKKSNSSAWAFLRPFTPKMWCITAVSFIVVGAVVWILEHRINDDFRGPPKRQIITILWFSFSTLFFSHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSSVKGIETLVSNTDPIGYQQGSFARNYLIEELGIHESRLVPLISAEHYVKALNDGPKKNGVAAIIDERAYVELFLSTHCEYSIVGQEFTKNGWGFAFQRDSPLAVDMSTAILRLSENGDLQRIHDKWLMKSACTSQASKFEVDRLQLNSFWGLFLICGLACLLALLIYLFLTVRQYSEHYSEELGSSEQTSRSASLQRFLSFADEKEDVFRSRSKRKQMQEASIRSMNGENSKGSSRKFGHGDANGIDAGE 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51418323 51422822 + Lag0013588.1 Lac1g3096 596667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3096 956 Gene3D - 112 421 - -
Lac1g3096 956 Gene3D - 169 446 - -
Lac1g3096 956 Pfam Receptor family ligand binding region 111 431 IPR001828 -
Lac1g3096 956 PRINTS Metabotropic glutamate GPCR signature 154 173 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lac1g3096 956 PRINTS Metabotropic glutamate GPCR signature 173 189 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lac1g3096 956 PRINTS Metabotropic glutamate GPCR signature 189 206 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lac1g3096 956 PRINTS Metabotropic glutamate GPCR signature 122 148 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lac1g3096 956 FunFam Glutamate receptor 169 322 - -
Lac1g3096 956 FunFam Glutamate receptor 604 734 - -
Lac1g3096 956 Pfam Bacterial extracellular solute-binding proteins, family 3 550 613 IPR001638 -
Lac1g3096 956 MobiDBLite consensus disorder prediction 911 956 - -
Lac1g3096 956 SUPERFAMILY Periplasmic binding protein-like II 471 836 - -
Lac1g3096 956 Gene3D - 485 603 - -
Lac1g3096 956 CDD GluR_Plant 493 833 - -
Lac1g3096 956 Gene3D - 803 833 - -
Lac1g3096 956 PIRSF IGluLR_plant 100 951 IPR017103 -
Lac1g3096 956 MobiDBLite consensus disorder prediction 926 940 - -
Lac1g3096 956 Gene3D - 762 802 - -
Lac1g3096 956 FunFam Glutamate receptor 730 837 - -
Lac1g3096 956 MobiDBLite consensus disorder prediction 911 925 - -
Lac1g3096 956 Gene3D - 604 729 - -
Lac1g3096 956 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 103 919 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lac1g3096 956 SMART GluR_14 494 835 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac1g3096 956 FunFam Glutamate receptor 488 604 - -
Lac1g3096 956 Pfam Ligand-gated ion channel 835 866 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac1g3096 956 SUPERFAMILY Periplasmic binding protein-like I 113 484 IPR028082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0465 Lac-Chr12:5104674 Lac1g3096 Lac-Chr1:51418323 3.50E-262 dispersed
Lac1g3096 Lac-Chr1:51418323 Lac2g0067 Lac-Chr2:476672 1.00E-296 dispersed
Lac1g3096 Lac-Chr1:51418323 Lac9g2058 Lac-Chr9:40164506 2.60E-239 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3096 K05387 - csv:101213408 1487.63