Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3110 ATGTTCCAACAACAGAGTGCTCGTAATTCCAGCTTTCTTCAAAACGACTCATTAGTTCGTGATCAGCATATTATACCTTCTGATGCCAGCTTGATGGAACCCGCAAATGGAAGTAATGGTCCCAGCAACAACCCGAATTTGGCCTCGAAGCAGAGACTGCGATGGACACATGATCTTCACGAAAGATTTGTTAATGCAGTGGCTCAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCACCTGCAGAAATATCGACTCGCCAAATACCTTCCCGACTCCTCATCTGATGGGAAAAAGGCTGAGAAGAAGGATTCTAGTGACATTCTATCAAACATTGATGGCTCGTCGGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAAGTTCAGAAGCGACTGCATGAACAATTAGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAATACCTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCTCCAGTTACCTCTTCATTTTCAGCTCCTGCTTCTGGTGACAACTGCCCAGAAACTGATAAAAACGACCCGCCAACACCTGCGCCCACATCTGAGTCGCCTCGCCAAGAGAAAGCATCAAAGGAACGTGCCCAGACTAAGAGTGTCTCTGTTGATGATTCTTTCTCGTCTCATCACGAACCGTTGACTCCAGATTCTGGTTGCCATAGCTCCCCAAGTGAGAGCCCAAGACCAGTGAAGAAGCAACGGCAGTACAGGGATGATGCATTTTCCAAATCAGAGATAATACTTGCACATCAAATACTGGAGTCAAGTCTAAACTCCACTATCAAGGAATCACACTCCGTTTTTCCAGCCAGGGAAGAGTTCGATCCTTTGTCTGGAATATCGATAGGGGACGATGATCGTTTGGACAAAACCACAAGGTTTTCATAG 1002 45.51 MFQQQSARNSSFLQNDSLVRDQHIIPSDASLMEPANGSNGPSNNPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKAEKKDSSDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPVTSSFSAPASGDNCPETDKNDPPTPAPTSESPRQEKASKERAQTKSVSVDDSFSSHHEPLTPDSGCHSSPSESPRPVKKQRQYRDDAFSKSEIILAHQILESSLNSTIKESHSVFPAREEFDPLSGISIGDDDRLDKTTRFS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51529183 51531320 - Lag0013602.1 Lac1g3110 596681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3110 333 NCBIfam myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677(InterPro)
Lac1g3110 333 SUPERFAMILY Homeodomain-like 49 104 IPR009057 -
Lac1g3110 333 Coils Coil 139 159 - -
Lac1g3110 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 107 IPR017930 -
Lac1g3110 333 MobiDBLite consensus disorder prediction 110 132 - -
Lac1g3110 333 MobiDBLite consensus disorder prediction 238 267 - -
Lac1g3110 333 FunFam Myb family transcription factor 49 107 - -
Lac1g3110 333 MobiDBLite consensus disorder prediction 309 333 - -
Lac1g3110 333 Gene3D - 49 108 - -
Lac1g3110 333 MobiDBLite consensus disorder prediction 316 333 - -
Lac1g3110 333 MobiDBLite consensus disorder prediction 29 48 - -
Lac1g3110 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 35 270 IPR046955 GO:0003700(InterPro)
Lac1g3110 333 MobiDBLite consensus disorder prediction 110 126 - -
Lac1g3110 333 MobiDBLite consensus disorder prediction 189 276 - -
Lac1g3110 333 Pfam MYB-CC type transfactor, LHEQLE motif 136 182 IPR025756 -
Lac1g3110 333 MobiDBLite consensus disorder prediction 32 48 - -
Lac1g3110 333 Pfam Myb-like DNA-binding domain 52 103 IPR001005 -
Lac1g3110 333 MobiDBLite consensus disorder prediction 189 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2441 Lac-Chr10:37726524 Lac1g3110 Lac-Chr1:51529183 2.90E-06 dispersed
Lac1g0810 Lac-Chr1:20627707 Lac1g3110 Lac-Chr1:51529183 6.50E-27 dispersed
Lac1g3110 Lac-Chr1:51529183 Lac3g1914 Lac-Chr3:21466592 2.40E-27 dispersed
Lac1g3110 Lac-Chr1:51529183 Lac1g3111 Lac-Chr1:51537919 5.80E-21 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23360 PF00249 Myb_DNA-binding 1.20E-07 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3110 - - - 0.0