Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3110 ATGTTCCAACAACAGAGTGCTCGTAATTCCAGCTTTCTTCAAAACGACTCATTAGTTCGTGATCAGCATATTATACCTTCTGATGCCAGCTTGATGGAACCCGCAAATGGAAGTAATGGTCCCAGCAACAACCCGAATTTGGCCTCGAAGCAGAGACTGCGATGGACACATGATCTTCACGAAAGATTTGTTAATGCAGTGGCTCAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCACCTGCAGAAATATCGACTCGCCAAATACCTTCCCGACTCCTCATCTGATGGGAAAAAGGCTGAGAAGAAGGATTCTAGTGACATTCTATCAAACATTGATGGCTCGTCGGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAAGTTCAGAAGCGACTGCATGAACAATTAGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAATACCTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCTCCAGTTACCTCTTCATTTTCAGCTCCTGCTTCTGGTGACAACTGCCCAGAAACTGATAAAAACGACCCGCCAACACCTGCGCCCACATCTGAGTCGCCTCGCCAAGAGAAAGCATCAAAGGAACGTGCCCAGACTAAGAGTGTCTCTGTTGATGATTCTTTCTCGTCTCATCACGAACCGTTGACTCCAGATTCTGGTTGCCATAGCTCCCCAAGTGAGAGCCCAAGACCAGTGAAGAAGCAACGGCAGTACAGGGATGATGCATTTTCCAAATCAGAGATAATACTTGCACATCAAATACTGGAGTCAAGTCTAAACTCCACTATCAAGGAATCACACTCCGTTTTTCCAGCCAGGGAAGAGTTCGATCCTTTGTCTGGAATATCGATAGGGGACGATGATCGTTTGGACAAAACCACAAGGTTTTCATAG 1002 45.51 MFQQQSARNSSFLQNDSLVRDQHIIPSDASLMEPANGSNGPSNNPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKAEKKDSSDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPVTSSFSAPASGDNCPETDKNDPPTPAPTSESPRQEKASKERAQTKSVSVDDSFSSHHEPLTPDSGCHSSPSESPRPVKKQRQYRDDAFSKSEIILAHQILESSLNSTIKESHSVFPAREEFDPLSGISIGDDDRLDKTTRFS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51529183 51531320 - Lag0013602.1 Lac1g3110 596681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3110 333 NCBIfam myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677(InterPro)
Lac1g3110 333 SUPERFAMILY Homeodomain-like 49 104 IPR009057 -
Lac1g3110 333 Coils Coil 139 159 - -
Lac1g3110 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 107 IPR017930 -
Lac1g3110 333 MobiDBLite consensus disorder prediction 110 132 - -
Lac1g3110 333 MobiDBLite consensus disorder prediction 238 267 - -
Lac1g3110 333 FunFam Myb family transcription factor 49 107 - -
Lac1g3110 333 MobiDBLite consensus disorder prediction 309 333 - -
Lac1g3110 333 Gene3D - 49 108 - -
Lac1g3110 333 MobiDBLite consensus disorder prediction 316 333 - -
Lac1g3110 333 MobiDBLite consensus disorder prediction 29 48 - -
Lac1g3110 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 35 270 IPR046955 GO:0003700(InterPro)
Lac1g3110 333 MobiDBLite consensus disorder prediction 110 126 - -
Lac1g3110 333 MobiDBLite consensus disorder prediction 189 276 - -
Lac1g3110 333 Pfam MYB-CC type transfactor, LHEQLE motif 136 182 IPR025756 -
Lac1g3110 333 MobiDBLite consensus disorder prediction 32 48 - -
Lac1g3110 333 Pfam Myb-like DNA-binding domain 52 103 IPR001005 -
Lac1g3110 333 MobiDBLite consensus disorder prediction 189 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3110 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2441 Lac-Chr10:37726524 Lac1g3110 Lac-Chr1:51529183 2.90E-06 dispersed
Lac1g0810 Lac-Chr1:20627707 Lac1g3110 Lac-Chr1:51529183 6.50E-27 dispersed
Lac1g3110 Lac-Chr1:51529183 Lac3g1914 Lac-Chr3:21466592 2.40E-27 dispersed
Lac1g3110 Lac-Chr1:51529183 Lac1g3111 Lac-Chr1:51537919 5.80E-21 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac11g2446 . 190 391 G2-like Transcription Factor Family AT5G16560 50.7 4.7e-41 166.4
Lac11g2446 . 198 391 G2-like Transcription Factor Family AT4G17695 50.3 1.6e-36 151.0
Lac2g0265 . 10 183 G2-like Transcription Factor Family AT5G42630 58.2 2.6e-41 166.4
Lac6g0365 . 16 162 G2-like Transcription Factor Family AT5G42630 60.6 2.4e-39 159.8
Lac7g2753 . 1 322 G2-like Transcription Factor Family AT5G59570 50.7 1.9e-63 240.4
Lac9g2452 . 19 216 G2-like Transcription Factor Family AT5G59570 50.2 5.5e-39 159.1
Lac13g0461 . 19 260 G2-like Transcription Factor Family AT1G25550 50.6 4.0e-52 202.6
Lac8g1421 . 20 266 G2-like Transcription Factor Family AT1G25550 54.2 4.5e-51 199.1
Lac7g2753 . 1 295 G2-like Transcription Factor Family AT3G46640 50.7 6.0e-63 238.8
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT5G05090 56.9 2.8e-74 276.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT5G05090 57.4 1.5e-72 270.4
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT4G13640 56.7 1.2e-62 237.7
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac9g2297 . 1 364 G2-like Transcription Factor Family AT1G79430 53.5 9.1e-81 298.1
Lac12g0030 . 3 356 G2-like Transcription Factor Family AT1G79430 52.8 1.2e-80 297.7
Lac7g0460 . 44 208 G2-like Transcription Factor Family AT1G79430 61.2 1.7e-39 161.0
Lac1g3110 . 85 330 G2-like Transcription Factor Family AT2G01060 62.8 4.2e-58 222.2
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 2.4e-91 333.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT3G10760 57.5 4.2e-88 322.4
Lac1g1554 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.6e-60 230.3
Lac3g1914 . 485 626 G2-like Transcription Factor Family AT4G28610 71.3 3.5e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23360 PF00249 Myb_DNA-binding 1.20E-07 CL0123 Lac TF