Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3111 ATGTTTCCAAGACTTGTTAATCCCGACGGAGATATCCAGATCCATGGTGCCCGTGGTTCTGTTGCTTCCGACCTCACTCACAGCCACCGGGGAGACCCTTGTCTCGTCTTGACTTCAGATCCCAAACCTCGCCTCCGATGGACTGCCGATCTTCACGAGCGATTCGTCGATGCCGTCACTCAGCTCGGTGGTGCTAGCAAAGCTACACCAAAAGCAATAATGCGAACAATGAATGTGAAAGGATTGACTCTCTTCCATTTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGGGTGAGGCATCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTACCAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCGTTAAGAGCGCAAATGGAAGTGCAAAGTAAGTTACATCTGCAAGTTGAGCTAGCTGACCTTACCATTGTTGTGCAGGCTGAGAAGCACCTACGGATTCGTCAGGATGCCGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCTGATCAATTTATTGGAGGTGCAGTTTCAGACTCAGACAGCAAGAAATCCCAAGGACTGGATCGTAAGAGCCCAAGAAGTTCCTCCATCGACCCACTTGGCTTCTATGCTTCGCAACCCCAAGAGTTGGAAAGAGTGAACGGCACAGAAGAAGTGCAGGGTAATCTTCCTTGCCAAAGGGCTGATTGTTCGACTGAAAGCTGCCTAACCTCGAACGAGAGTCCTGGGGGATTGACCATGGAAAAATCACCTGTTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCCACTGCATCTTTGATTTGGGGCGAAGCCAAGGAAAGGATACAAGATGCTAATATCATCCAAGTTAACCATCACGGTGTATCCGGGTGCGACATGTGGGGATGA 969 47.57 MFPRLVNPDGDIQIHGARGSVASDLTHSHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVELADLTIVVQAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGLDRKSPRSSSIDPLGFYASQPQELERVNGTEEVQGNLPCQRADCSTESCLTSNESPGGLTMEKSPVASKKNMVNLDSATASLIWGEAKERIQDANIIQVNHHGVSGCDMWG 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51537919 51542467 - Lag0013603.1 Lac1g3111 596682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3111 322 MobiDBLite consensus disorder prediction 200 226 - -
Lac1g3111 322 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677(InterPro)
Lac1g3111 322 FunFam Myb family transcription factor 41 99 - -
Lac1g3111 322 Pfam Myb-like DNA-binding domain 44 95 IPR001005 -
Lac1g3111 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Lac1g3111 322 Gene3D - 41 99 - -
Lac1g3111 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 26 300 IPR046955 GO:0003700(InterPro)
Lac1g3111 322 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Lac1g3111 322 Pfam MYB-CC type transfactor, LHEQLE motif 137 191 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3111 Lac-Chr1:51537919 Lac7g0460 Lac-Chr7:3641995 2.10E-44 dispersed
Lac1g3110 Lac-Chr1:51529183 Lac1g3111 Lac-Chr1:51537919 5.80E-21 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23361 PF14379 Myb_CC_LHEQLE 3.40E-10 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3111 - - - 0.0