Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3111 ATGTTTCCAAGACTTGTTAATCCCGACGGAGATATCCAGATCCATGGTGCCCGTGGTTCTGTTGCTTCCGACCTCACTCACAGCCACCGGGGAGACCCTTGTCTCGTCTTGACTTCAGATCCCAAACCTCGCCTCCGATGGACTGCCGATCTTCACGAGCGATTCGTCGATGCCGTCACTCAGCTCGGTGGTGCTAGCAAAGCTACACCAAAAGCAATAATGCGAACAATGAATGTGAAAGGATTGACTCTCTTCCATTTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGGGTGAGGCATCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTACCAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCGTTAAGAGCGCAAATGGAAGTGCAAAGTAAGTTACATCTGCAAGTTGAGCTAGCTGACCTTACCATTGTTGTGCAGGCTGAGAAGCACCTACGGATTCGTCAGGATGCCGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCTGATCAATTTATTGGAGGTGCAGTTTCAGACTCAGACAGCAAGAAATCCCAAGGACTGGATCGTAAGAGCCCAAGAAGTTCCTCCATCGACCCACTTGGCTTCTATGCTTCGCAACCCCAAGAGTTGGAAAGAGTGAACGGCACAGAAGAAGTGCAGGGTAATCTTCCTTGCCAAAGGGCTGATTGTTCGACTGAAAGCTGCCTAACCTCGAACGAGAGTCCTGGGGGATTGACCATGGAAAAATCACCTGTTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCCACTGCATCTTTGATTTGGGGCGAAGCCAAGGAAAGGATACAAGATGCTAATATCATCCAAGTTAACCATCACGGTGTATCCGGGTGCGACATGTGGGGATGA 969 47.57 MFPRLVNPDGDIQIHGARGSVASDLTHSHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVELADLTIVVQAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGLDRKSPRSSSIDPLGFYASQPQELERVNGTEEVQGNLPCQRADCSTESCLTSNESPGGLTMEKSPVASKKNMVNLDSATASLIWGEAKERIQDANIIQVNHHGVSGCDMWG 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51537919 51542467 - Lag0013603.1 Lac1g3111 596682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3111 322 MobiDBLite consensus disorder prediction 200 226 - -
Lac1g3111 322 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677(InterPro)
Lac1g3111 322 FunFam Myb family transcription factor 41 99 - -
Lac1g3111 322 Pfam Myb-like DNA-binding domain 44 95 IPR001005 -
Lac1g3111 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Lac1g3111 322 Gene3D - 41 99 - -
Lac1g3111 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 26 300 IPR046955 GO:0003700(InterPro)
Lac1g3111 322 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Lac1g3111 322 Pfam MYB-CC type transfactor, LHEQLE motif 137 191 IPR025756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3111 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3111 Lac-Chr1:51537919 Lac7g0460 Lac-Chr7:3641995 2.10E-44 dispersed
Lac1g3110 Lac-Chr1:51529183 Lac1g3111 Lac-Chr1:51537919 5.80E-21 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac11g2446 . 190 391 G2-like Transcription Factor Family AT5G16560 50.7 4.7e-41 166.4
Lac11g2446 . 198 391 G2-like Transcription Factor Family AT4G17695 50.3 1.6e-36 151.0
Lac2g0265 . 10 183 G2-like Transcription Factor Family AT5G42630 58.2 2.6e-41 166.4
Lac6g0365 . 16 162 G2-like Transcription Factor Family AT5G42630 60.6 2.4e-39 159.8
Lac7g2753 . 1 322 G2-like Transcription Factor Family AT5G59570 50.7 1.9e-63 240.4
Lac9g2452 . 19 216 G2-like Transcription Factor Family AT5G59570 50.2 5.5e-39 159.1
Lac13g0461 . 19 260 G2-like Transcription Factor Family AT1G25550 50.6 4.0e-52 202.6
Lac8g1421 . 20 266 G2-like Transcription Factor Family AT1G25550 54.2 4.5e-51 199.1
Lac7g2753 . 1 295 G2-like Transcription Factor Family AT3G46640 50.7 6.0e-63 238.8
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT5G05090 56.9 2.8e-74 276.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT5G05090 57.4 1.5e-72 270.4
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT4G13640 56.7 1.2e-62 237.7
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac9g2297 . 1 364 G2-like Transcription Factor Family AT1G79430 53.5 9.1e-81 298.1
Lac12g0030 . 3 356 G2-like Transcription Factor Family AT1G79430 52.8 1.2e-80 297.7
Lac7g0460 . 44 208 G2-like Transcription Factor Family AT1G79430 61.2 1.7e-39 161.0
Lac1g3110 . 85 330 G2-like Transcription Factor Family AT2G01060 62.8 4.2e-58 222.2
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 2.4e-91 333.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT3G10760 57.5 4.2e-88 322.4
Lac1g1554 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.6e-60 230.3
Lac3g1914 . 485 626 G2-like Transcription Factor Family AT4G28610 71.3 3.5e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007112 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23361 PF14379 Myb_CC_LHEQLE 3.40E-10 No_clan Lac TF