Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g3129 | ATGGCCTCAATTGCTGGTTCCAAAGCTTCCTCAAATCCGCCACAAAGAACAGCCAATGGTGAAATGGCTAATGGGAAGGATGCCGGGCCCTTGCCTCCGCAGATTTCAAAGTTAAGTAAACCTGAATCAGTTACTTCTGACCACTCTAAATCAGTAAAGAGTAACTCAAAGCAGGATAAGGAAATTTCTTCCGACAAAAAGTCACCGGTATCGAATCAAAATGGATCTGCTAAGTCGTTGACTGAGAAATTTAACTTCAGCATTTCGTCACCTGGTCTGAAACAAACATCAACTGAAGTAGATTCCCCTCACAATGAAGCTAAATGCTCACCTGGAAGCTCACTAGACCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCTTTTTCCGCCAAAGTAAGTGATGGGACTAGCAGCCTTGCCAAGACCAGTGGAAGCGCGAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGCAAGAGCAGTATATGTAGAGGGAGCACGAGCAGTGATGTAAGCGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAGGCCATTCAAGTTGTTCGTGCAAAAGATGGGGCCATGGGATTAGGTCATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTTTATCTCTCTGAGTTAAGTGGAACCAAATGCCATTTTGCAATGAAGGTTATGGATAAAAATACTCTAGCAAGTCGTAAAAAATTGCTTCGTGCACAGACAGAAAGAGAAATACTTCAGTCTCTTGATCACCCCTTCCTTCCAACGTTATACACCCACTTTGAGACAGAAAAATTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGACTTGCACACTCTAAGGCAGAGGCAACCAGGGAAGCATTTTCCTGAGCAGGCAGTGAAATTTTATGTAGCAGAGGTTCTTCTTGCACTGGAATACCTGCATATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAAAATGTTCTTGTGAGGGAAGATGGCCACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGTGCTGTTAGTCCGACACTTGTCAAAAATCTCTCTGCAGAGTCTGAGGCTTTAAGAAAGAACACAGGTTACTGCGTGCAGCCTGCTTGCATTGAGCCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCACGCCTCTTTTCTAGCAAGTCAAAGAAGGAACGGAAACCCAAAACTGAAATGGGAAATCAAGTCAGCCCATTGCCTGAGCTCATTGCAGAACCAACTGATGCCCGATCCATGTCTTTTGTTGGAACTCACGAGTACTTGGCACCTGAGATCATCAAGGGTGAAGGCCATGGAAGTGCTGTAGATTGGTGGACTTTTGGAATTTTTCTATATGAGCTACTATTTGGTAAAACTCCTTTTAAGGGGTCTGGAAATCGAGCTACACTATTCAACATTGTCGGTCAGCCACTAAGGTTTCCGGATGCACCAGTTGTGAGTTTTGCTGCAAAGGATCTGATAAGGGGATTGCTAGTGAAGGAGCCTCAACACAGATTGGCTTATAAACGTGGAGCAACTGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTGAACTGGGCATTAATACGTTGTGCTACGCCTCCCGAAATCCCAAGGCCAGTTGAGATTGAGAGAATACCTCATGCAGTGGCATCAACCAGTGAAAAGGCCGCTGCTGTTGCAGCAGCTGCAGATAAAAAAGCTTCCGATAATTATCTCGAGTTCGATTTCTTTTAG | 1836 | 44.39 | MASIAGSKASSNPPQRTANGEMANGKDAGPLPPQISKLSKPESVTSDHSKSVKSNSKQDKEISSDKKSPVSNQNGSAKSLTEKFNFSISSPGLKQTSTEVDSPHNEAKCSPGSSLDQEKKTSEYGSVKSSSFSAKVSDGTSSLAKTSGSAKVSDHGNFVESGKSSICRGSTSSDVSDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELSGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKTEMGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAAAVAAAADKKASDNYLEFDFF | 611 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 51633641 | 51637208 | + | Lag0013621.1 | Lac1g3129 | 596700 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g3129 | 611 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Lac1g3129 | 611 | FunFam | Serine/threonine-protein kinase D6PK-like | 215 | 300 | - | - | |
Lac1g3129 | 611 | Gene3D | Transferase(Phosphotransferase) domain 1 | 301 | 368 | - | - | |
Lac1g3129 | 611 | Gene3D | Transferase(Phosphotransferase) domain 1 | 448 | 572 | - | - | |
Lac1g3129 | 611 | Gene3D | Phosphorylase Kinase; domain 1 | 215 | 300 | - | - | |
Lac1g3129 | 611 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 338 | 350 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac1g3129 | 611 | CDD | STKc_phototropin_like | 216 | 577 | - | - | |
Lac1g3129 | 611 | SUPERFAMILY | Protein kinase-like (PK-like) | 192 | 580 | IPR011009 | - | |
Lac1g3129 | 611 | FunFam | serine/threonine-protein kinase D6PK-like | 301 | 368 | - | - | |
Lac1g3129 | 611 | MobiDBLite | consensus disorder prediction | 67 | 190 | - | - | |
Lac1g3129 | 611 | FunFam | Serine/threonine-protein kinase AGC1-7 | 447 | 572 | - | - | |
Lac1g3129 | 611 | SMART | serkin_6 | 217 | 554 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac1g3129 | 611 | Pfam | Protein kinase domain | 451 | 554 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac1g3129 | 611 | Pfam | Protein kinase domain | 218 | 367 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac1g3129 | 611 | PANTHER | FLIPPASE KINASE 1-RELATED | 70 | 586 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Lac1g3129 | 611 | ProSiteProfiles | Protein kinase domain profile. | 217 | 554 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac1g3129 | 611 | MobiDBLite | consensus disorder prediction | 43 | 66 | - | - | |
Lac1g3129 | 611 | MobiDBLite | consensus disorder prediction | 1 | 190 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2249 | Lac-Chr1:43934847 | Lac1g3129 | Lac-Chr1:51633641 | 5.90E-150 | dispersed | |
Lac1g3129 | Lac-Chr1:51633641 | Lac9g2687 | Lac-Chr9:45166135 | 8.70E-148 | dispersed | |
Lac10g1141 | Lac-Chr10:9560175 | Lac1g3129 | Lac-Chr1:51633641 | 1.20E-101 | transposed | |
Lac6g2951 | Lac-Chr6:47118528 | Lac1g3129 | Lac-Chr1:51633641 | 8.70E-114 | transposed | |
Lac7g0042 | Lac-Chr7:399941 | Lac1g3129 | Lac-Chr1:51633641 | 8.60E-110 | transposed | |
Lac7g0043 | Lac-Chr7:403166 | Lac1g3129 | Lac-Chr1:51633641 | 4.20E-62 | transposed | |
Lac8g0213 | Lac-Chr8:2395477 | Lac1g3129 | Lac-Chr1:51633641 | 1.00E-186 | transposed | |
Lac1g3129 | Lac-Chr1:51633641 | Lac10g1598 | Lac-Chr10:16863774 | 5.90E-205 | wgd | |
Lac1g3129 | Lac-Chr1:51633641 | Lac12g0426 | Lac-Chr12:4741509 | 2.20E-87 | wgd | |
Lac1g3129 | Lac-Chr1:51633641 | Lac9g1924 | Lac-Chr9:39021580 | 1.90E-94 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85937 | PF00069 | Pkinase | 1.10E-37 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g3129 | K08286 | - | csv:101209748 | 1091.26 |