Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3129 ATGGCCTCAATTGCTGGTTCCAAAGCTTCCTCAAATCCGCCACAAAGAACAGCCAATGGTGAAATGGCTAATGGGAAGGATGCCGGGCCCTTGCCTCCGCAGATTTCAAAGTTAAGTAAACCTGAATCAGTTACTTCTGACCACTCTAAATCAGTAAAGAGTAACTCAAAGCAGGATAAGGAAATTTCTTCCGACAAAAAGTCACCGGTATCGAATCAAAATGGATCTGCTAAGTCGTTGACTGAGAAATTTAACTTCAGCATTTCGTCACCTGGTCTGAAACAAACATCAACTGAAGTAGATTCCCCTCACAATGAAGCTAAATGCTCACCTGGAAGCTCACTAGACCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCTTTTTCCGCCAAAGTAAGTGATGGGACTAGCAGCCTTGCCAAGACCAGTGGAAGCGCGAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGCAAGAGCAGTATATGTAGAGGGAGCACGAGCAGTGATGTAAGCGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAGGCCATTCAAGTTGTTCGTGCAAAAGATGGGGCCATGGGATTAGGTCATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTTTATCTCTCTGAGTTAAGTGGAACCAAATGCCATTTTGCAATGAAGGTTATGGATAAAAATACTCTAGCAAGTCGTAAAAAATTGCTTCGTGCACAGACAGAAAGAGAAATACTTCAGTCTCTTGATCACCCCTTCCTTCCAACGTTATACACCCACTTTGAGACAGAAAAATTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGACTTGCACACTCTAAGGCAGAGGCAACCAGGGAAGCATTTTCCTGAGCAGGCAGTGAAATTTTATGTAGCAGAGGTTCTTCTTGCACTGGAATACCTGCATATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAAAATGTTCTTGTGAGGGAAGATGGCCACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGTGCTGTTAGTCCGACACTTGTCAAAAATCTCTCTGCAGAGTCTGAGGCTTTAAGAAAGAACACAGGTTACTGCGTGCAGCCTGCTTGCATTGAGCCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCACGCCTCTTTTCTAGCAAGTCAAAGAAGGAACGGAAACCCAAAACTGAAATGGGAAATCAAGTCAGCCCATTGCCTGAGCTCATTGCAGAACCAACTGATGCCCGATCCATGTCTTTTGTTGGAACTCACGAGTACTTGGCACCTGAGATCATCAAGGGTGAAGGCCATGGAAGTGCTGTAGATTGGTGGACTTTTGGAATTTTTCTATATGAGCTACTATTTGGTAAAACTCCTTTTAAGGGGTCTGGAAATCGAGCTACACTATTCAACATTGTCGGTCAGCCACTAAGGTTTCCGGATGCACCAGTTGTGAGTTTTGCTGCAAAGGATCTGATAAGGGGATTGCTAGTGAAGGAGCCTCAACACAGATTGGCTTATAAACGTGGAGCAACTGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTGAACTGGGCATTAATACGTTGTGCTACGCCTCCCGAAATCCCAAGGCCAGTTGAGATTGAGAGAATACCTCATGCAGTGGCATCAACCAGTGAAAAGGCCGCTGCTGTTGCAGCAGCTGCAGATAAAAAAGCTTCCGATAATTATCTCGAGTTCGATTTCTTTTAG 1836 44.39 MASIAGSKASSNPPQRTANGEMANGKDAGPLPPQISKLSKPESVTSDHSKSVKSNSKQDKEISSDKKSPVSNQNGSAKSLTEKFNFSISSPGLKQTSTEVDSPHNEAKCSPGSSLDQEKKTSEYGSVKSSSFSAKVSDGTSSLAKTSGSAKVSDHGNFVESGKSSICRGSTSSDVSDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELSGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKTEMGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAAAVAAAADKKASDNYLEFDFF 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51633641 51637208 + Lag0013621.1 Lac1g3129 596700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3129 611 MobiDBLite consensus disorder prediction 1 19 - -
Lac1g3129 611 FunFam Serine/threonine-protein kinase D6PK-like 215 300 - -
Lac1g3129 611 Gene3D Transferase(Phosphotransferase) domain 1 301 368 - -
Lac1g3129 611 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
Lac1g3129 611 Gene3D Phosphorylase Kinase; domain 1 215 300 - -
Lac1g3129 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3129 611 CDD STKc_phototropin_like 216 577 - -
Lac1g3129 611 SUPERFAMILY Protein kinase-like (PK-like) 192 580 IPR011009 -
Lac1g3129 611 FunFam serine/threonine-protein kinase D6PK-like 301 368 - -
Lac1g3129 611 MobiDBLite consensus disorder prediction 67 190 - -
Lac1g3129 611 FunFam Serine/threonine-protein kinase AGC1-7 447 572 - -
Lac1g3129 611 SMART serkin_6 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3129 611 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3129 611 Pfam Protein kinase domain 218 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3129 611 PANTHER FLIPPASE KINASE 1-RELATED 70 586 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac1g3129 611 ProSiteProfiles Protein kinase domain profile. 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3129 611 MobiDBLite consensus disorder prediction 43 66 - -
Lac1g3129 611 MobiDBLite consensus disorder prediction 1 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2249 Lac-Chr1:43934847 Lac1g3129 Lac-Chr1:51633641 5.90E-150 dispersed
Lac1g3129 Lac-Chr1:51633641 Lac9g2687 Lac-Chr9:45166135 8.70E-148 dispersed
Lac10g1141 Lac-Chr10:9560175 Lac1g3129 Lac-Chr1:51633641 1.20E-101 transposed
Lac6g2951 Lac-Chr6:47118528 Lac1g3129 Lac-Chr1:51633641 8.70E-114 transposed
Lac7g0042 Lac-Chr7:399941 Lac1g3129 Lac-Chr1:51633641 8.60E-110 transposed
Lac7g0043 Lac-Chr7:403166 Lac1g3129 Lac-Chr1:51633641 4.20E-62 transposed
Lac8g0213 Lac-Chr8:2395477 Lac1g3129 Lac-Chr1:51633641 1.00E-186 transposed
Lac1g3129 Lac-Chr1:51633641 Lac10g1598 Lac-Chr10:16863774 5.90E-205 wgd
Lac1g3129 Lac-Chr1:51633641 Lac12g0426 Lac-Chr12:4741509 2.20E-87 wgd
Lac1g3129 Lac-Chr1:51633641 Lac9g1924 Lac-Chr9:39021580 1.90E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85937 PF00069 Pkinase 1.10E-37 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3129 K08286 - csv:101209748 1091.26