Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3147 ATGCAAGCATCTCAGAATCGCCAGTCTTCATCTGTGATCCATGAGATGTATCAACAGTCTGTTCAAGAGATAGATCCCTACTATTTGTCTCATTTCCACGTATTGGAAAACAATGTCTCTCCTGATGCAGGCAGTCAGGGAAACAGTGTTAACTTTTCTTCCTATAAGGATCAGTTCTTTACTCTGGAATCATTCCCAGCTACTGCTGATCTGAGTGCGTGTAATTCCCCTTCTGCTGTTAGTGTTCTGTCTTCCAGGAGCCCTTTCTCGCCTCAAGGTTCTCAATCCTACTCTTCAGATCAACATCACTCGTTTGACAACACATGCGGATCACCACTAAGTGGATGCTCAGTAACTGATGATGACAATGAACTGAAGCACAAGCTGAAGGAATTAGAAATTTCTTTACTGGGACCTGAATCTGATATTGTGGACAGCTGCTACTGTTCTTTCAGGGGTGGGGCGCATCGAGATGCCTCAGCAGCAAGGTGGAACTGGAATCAAGTGGTTGAAATGATTCCTAGACTAAATCTTCGTGACACACTTATCCATTGTGCCCAAGCAATTCATGAGGCTGATCTAAATGTGGCAACATTATTTATGGATGTCTTAGGGCAGATGGTTTCGGTCTCTGGTGATCCAGCCCAGAGGTTGGGAGCTTATTTGTTGGAAGGGCTAAGAGCAAGGTTGGAACGATCTGGCAGTGCAATATACAAGGCCCTAAGGTGCGAAGAGCCAACAAGCTCTGAACTAATGTCCTATATGTCTATTCTATTCCAGATCTGCCCATACTTCAAATTTGCTTATGCTTCTGCCAATGCTTTCATTCGGGAGGCCATGGTAAATGAACCCATAATCCACATTATTGATTTTCAAATCGCACAGGGTAGTCAGTATATACCTCTCATTCAGGATCTTGCCAATCGGCCCGGTGGACCCCCATTTCTTCTTCGCATTACAGGTGTGGATGATTCCCAATCAGCTCATGCTCGGGGAGGGGGACTTCAAATTGTGGGACAGAAGCTAGCTCAGCTGGCTAAGTGTAATGGAATTCCCTTCCAATTTCATGCTGCAGCAATGTCTGGTTGTGAGGTGGAACGAAGTAATCTTAGAATACAACCTGGAGAAGCATTGGCAGTAAATTTTCCATACGCATTGCACCACATGCCAGATGAGAGTGTGAGCACACAGAATCATCGAGACAGGCTTCTAAGGCTGGTGAAAAGTCTGTCACCGAAAGTAGTAACTATTGTTGAGCAGGAATCCAACACCAACACATCCCCATTCCTTCTACGTTTTGTCGAGACGCTGGATTATTATACTGCTATGTTCGAATCAATAGACGTAGCTCGTTCAAGAGACGACAAGCAGCGAATCAGGGCAGAGCAGCACTGTGTGGCCCGAGACATAGTGAACATGGTAGCTTGTGAGGGGTTCGAAAGGGTAGAACGCCATGAACTCCTTGGCAAGTGGAGGATGAGAATGAAGATGGCTGGTTTTACTCCATATCCAATGAGCTCCAATGTAACTGGAGCCGTCAAGAATTTGTTGAGGGAGTTCAATGAGAACTACAGATTCCAAGAAGCGAATGACGCTATCTACCTTGGCTGGAAAAACAGAGCAATGGCAACCTCCTCTGCATGGAGGTGA 1650 45.58 MQASQNRQSSSVIHEMYQQSVQEIDPYYLSHFHVLENNVSPDAGSQGNSVNFSSYKDQFFTLESFPATADLSACNSPSAVSVLSSRSPFSPQGSQSYSSDQHHSFDNTCGSPLSGCSVTDDDNELKHKLKELEISLLGPESDIVDSCYCSFRGGAHRDASAARWNWNQVVEMIPRLNLRDTLIHCAQAIHEADLNVATLFMDVLGQMVSVSGDPAQRLGAYLLEGLRARLERSGSAIYKALRCEEPTSSELMSYMSILFQICPYFKFAYASANAFIREAMVNEPIIHIIDFQIAQGSQYIPLIQDLANRPGGPPFLLRITGVDDSQSAHARGGGLQIVGQKLAQLAKCNGIPFQFHAAAMSGCEVERSNLRIQPGEALAVNFPYALHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFLLRFVETLDYYTAMFESIDVARSRDDKQRIRAEQHCVARDIVNMVACEGFERVERHELLGKWRMRMKMAGFTPYPMSSNVTGAVKNLLREFNENYRFQEANDAIYLGWKNRAMATSSAWR 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51736675 51738324 + Lag0013639.1 Lac1g3147 596718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3147 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 145 548 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac1g3147 549 Pfam GRAS domain family 178 549 IPR005202 -
Lac1g3147 549 ProSiteProfiles GRAS family profile. 169 549 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3147 Lac-Chr1:51736675 Lac9g1970 Lac-Chr9:39446838 4.70E-161 dispersed
Lac1g3147 Lac-Chr1:51736675 Lac10g3111 Lac-Chr10:45491599 3.20E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23363 PF03514 GRAS 5.10E-126 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3147 K27748 - csv:101207883 975.311