Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3168 ATGGCGACCTCTTGTTTCGGTTCACTTTGCATTCGGAAATCAAAGAGCAAGCCCTTGTCAACCCCTTCCTCATTGAAATCCCAGATGAATTCTGAAATGGAAAACATGGAAAGGAGAAGATTTGATAGTTTGGAATCGTGGTCGATGATCCTAGAGTCTGAAAATGTGGAAACTTGGGAGACATCAAAGGAGGATCAGGAGGAGTGGACAGCTGATCTATCTCAGCTCTTCATCGGAAACAAATTTGCCTCCGGTGCTCACAGTCGAATATACCGTGGAATTTACAAGCAGAGAGCCGTTGCTGTGAAGATGGTGAGGATTCCAAACCAAAAGGAGGAAACAAGGGCCAAACTTGAGCAACAGTTCAAGTCTGAAGTTGCCTTGCTTTCCCGTCTCTTTCATCCCAACATAGTTCAGTTCATTGCAGCCTGTAAAAAGCCACCTGTATACTGCATAATTACAGAGTATATGTCACAAGGAACTCTGAGGATGTATCTTAACAAGAAAGAGCCATATTCACTCTCAACAGAAACAATACTGAGGTTAGCTCTTGATATATCAAGAGGAATGGAATATCTTCATTCTCAAGGAGTAATCCACAGAGACCTCAAATCAAACAACTTGCTTCTAAACGATGAAATGAGAGTAAAAGTAGCAGATTTCGGAACCTCATGCCTCGAAACACAGTGTCGAGAATCAAAAGGGAACATGGGAACTTACAGATGGATGGCGCCGGAGATGATTAAAGAGAAGCCTTACACTCGCAAAGTTGATGTGTACAGCTTTGGGATTGTGCTGTGGGAGCTCACTACGGCTCTGCTTCCCTTTCAAGGGATGACCCCCGTGCAGGCTGCCTTTGCCGTCGCCGAGAAGAATGAGAGGCCGCCATTGCCGGCGAGTTGTCAGCCGGCGTTAGCCCACCTGATAAAGCGGTGTTGGGCGGCGAATCCGTCGAAGCGGCCGGATTTCAGCGACATTGTGGTGGCTTTGGAGAAATACGACGAGTGTGTGAAAGAGGGTCTTCCACTTGCACACCATAGAAGATTGGTAAACCGAAACGCCATTATTGACCGCTTGAAAGCTTGCGCCTCAACCAGCTCCTCAATACCTGTACATGCCTGA 1122 46.61 MATSCFGSLCIRKSKSKPLSTPSSLKSQMNSEMENMERRRFDSLESWSMILESENVETWETSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVVALEKYDECVKEGLPLAHHRRLVNRNAIIDRLKACASTSSSIPVHA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51859632 51861101 - Lag0013660.1 Lac1g3168 596739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3168 373 CDD STKc_MAP3K-like 83 327 - -
Lac1g3168 373 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3168 373 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3168 373 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3168 373 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3168 373 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3168 373 ProSiteProfiles Protein kinase domain profile. 76 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3168 373 SMART serkin_6 76 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3168 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3168 373 FunFam Serine/threonine-protein kinase isoform 1 66 158 - -
Lac1g3168 373 PANTHER SERINE-THREONINE PROTEIN KINASE 55 331 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac1g3168 373 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Lac1g3168 373 Pfam Protein tyrosine and serine/threonine kinase 79 329 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3168 373 SUPERFAMILY Protein kinase-like (PK-like) 51 327 IPR011009 -
Lac1g3168 373 FunFam serine/threonine-protein kinase HT1 159 352 - -
Lac1g3168 373 Gene3D Transferase(Phosphotransferase) domain 1 159 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0885 Lac-Chr10:7097697 Lac1g3168 Lac-Chr1:51859632 3.00E-90 dispersed
Lac10g2258 Lac-Chr10:34301054 Lac1g3168 Lac-Chr1:51859632 9.70E-21 dispersed
Lac1g3168 Lac-Chr1:51859632 Lac1g3332 Lac-Chr1:53046788 5.60E-89 dispersed
Lac6g2164 Lac-Chr6:37883945 Lac1g3168 Lac-Chr1:51859632 1.20E-26 dispersed
Lac9g2736 Lac-Chr9:45508633 Lac1g3168 Lac-Chr1:51859632 4.30E-24 dispersed
Lac10g0442 Lac-Chr10:3462646 Lac1g3168 Lac-Chr1:51859632 1.40E-110 transposed
Lac10g3297 Lac-Chr10:46829773 Lac1g3168 Lac-Chr1:51859632 1.10E-60 transposed
Lac1g3168 Lac-Chr1:51859632 Lac10g0637 Lac-Chr10:4901498 3.10E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85938 PF07714 PK_Tyr_Ser-Thr 5.30E-68 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3168 - - - 0.0