Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3180 ATGGATGGTCCTAGTGGAAGTTCTTCTGGTATGATGAATTTTGGAGATCAAAACAATAATGGGTTGTGTTCCATGATGATGATGATGCCTTTAATGTCCTCTCACCAACAACACCAAAACCACCACGATGGAGATGCATGTAGTTCATTTCTTCCTCTTCCTCCTCCTCCTAATTACAACAACAGCAACAACAACAGCACTTCTAACCCTATTTGTTACTTCATGGACGAAAACAACAACAACAACAACGAGGGTAATAATGCAAATTCTTCTTCTTCGTCTTCTGAAGTGAAGGCTAAAATCATGGCTCATCCCCACTACCATCGCCTTCTCGCTGCCTATGTCAATTGCCGAAAGGTGGGGGCGCCGCCGGAAGTGGTGGCGAGGCTTGAAGAAGCGTGTGCATCTGCAGCATCGATGAATGGTACGTCTTGTACAGGCTGTATTGGTGAAGATCCGGCGCTTGATCAGTTCATGGAAGCTTATTGTGAGATGCTCACCAAATATGAACAAGAACTTTCTAAACCCTTTAGGGATGCCATGCTTTTTCTTCAACGAATCGAGTGCCAATTCAAAGCCCTCTCTATTTCCTCCTCCGATGCTGCTTGTGGTGAGGCATTTGATAGGAATGGATCGTCTGAAGAGGAAGTTGACATCAATGGCCACTCCATCGACCCTCAAGCTGAAGATCGTGAACTGAAAGGTCAGCTCCTCCGCAAATACAGCGGTTACTTGGGCAGTCTCAAGCAAGAATTCATGAAGAAAAGGAAGAAGGGAAAGCTACCTAAGGAGGCCAGACAACAGCTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTATCCATCTGAGTCTCAGAAGCTAGCTTTAGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAACAATTGGTTCATCAATCAAAGAAAAAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACACAGTCTTGGGCAATCCTTTTCCCTTGGATATCTCTCCCACTCTACTCTAA 1053 44.73 MDGPSGSSSGMMNFGDQNNNGLCSMMMMMPLMSSHQQHQNHHDGDACSSFLPLPPPPNYNNSNNNSTSNPICYFMDENNNNNNEGNNANSSSSSSEVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEACASAASMNGTSCTGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIECQFKALSISSSDAACGEAFDRNGSSEEEVDINGHSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51962719 51966111 + Lag0013672.1 Lac1g3180 596751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3180 350 Pfam KNOX2 domain 148 194 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac1g3180 350 SMART KNOX1_2 95 139 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac1g3180 350 SMART KNOX2_2 145 196 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac1g3180 350 FunFam Homeobox protein knotted-1-like 2 257 319 - -
Lac1g3180 350 MobiDBLite consensus disorder prediction 60 97 - -
Lac1g3180 350 MobiDBLite consensus disorder prediction 34 97 - -
Lac1g3180 350 Pfam KNOX1 domain 97 135 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac1g3180 350 ProSiteProfiles 'Homeobox' domain profile. 252 315 IPR001356 GO:0003677(InterPro)
Lac1g3180 350 ProSiteProfiles ELK domain profile. 232 252 IPR005539 GO:0003677(InterPro)
Lac1g3180 350 Pfam Homeobox KN domain 272 311 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac1g3180 350 SUPERFAMILY Homeodomain-like 254 328 IPR009057 -
Lac1g3180 350 CDD homeodomain 264 316 IPR001356 GO:0003677(InterPro)
Lac1g3180 350 Gene3D - 257 319 - -
Lac1g3180 350 Pfam ELK domain 232 253 IPR005539 GO:0003677(InterPro)
Lac1g3180 350 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 322 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac1g3180 350 SMART HOX_1 254 319 IPR001356 GO:0003677(InterPro)
Lac1g3180 350 SMART ELK_2 232 253 IPR005539 GO:0003677(InterPro)
Lac1g3180 350 ProSitePatterns 'Homeobox' domain signature. 290 313 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0544 Lac-Chr12:5849358 Lac1g3180 Lac-Chr1:51962719 4.00E-105 dispersed
Lac1g3180 Lac-Chr1:51962719 Lac6g0216 Lac-Chr6:1692084 3.60E-66 dispersed
Lac1g3180 Lac-Chr1:51962719 Lac2g0436 Lac-Chr2:3206245 2.30E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23365 PF03791 KNOX2 2.60E-20 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3180 - - - 0.0