Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3191 ATGGCCATGGCTATCCTATACCTGATCTTCTTCCTAGCCACCATCATAATCCCTTCTCATTCCATGCCCTACCCCTACCCCTACCCCAACAAGAGACTAGCCCTCAACCCCATCGACGCCTGCTGGCGTACTAACCCCAACTGGGCCGCCAACCGCCGCGCCTTGGCCAACTGCGCTGTCGGGTACGGCAAAGACGCCATCGGAGGCAAATTCGGGTCAATCTACGTCGTCACCGACCCGTCCGACGACCCGGAATATCCGGAGCCTGGAACGCTGCGTTACGGGGTGATCCAAACGCAGCCCTTATGGATTGTATTTGCAAAGGACATGGTGATCACGCCCAAAAGAGAGCTGATGGTGAACAGCTTCAAGACCATCGACGGGCGAGGGGCCAAAGTGGAGATTGCCAATGGGCCATGCATTACAATACAAAACGTGAGCCATGTCATAATTCATGGGATCAGCATCCATGACTGCAAGCCTGGGAAGCCTGGCCGCGTGAGGAGCAGCGTGAACCACTGCGGTGAGCGCCAAGTGTCTGATGGAGACGCCATTTCTATATTCACTTCTTCGCATATTTGGATCGACCATTGCTCTTTGGCTCGCTGCACTGATGGGCTCATCGACGTCATTCATGCTTCCACTGCTGTCACCATTTCCAACAATTACTTCACTCAACATGACAAAGTGATCCTTCTTGGCCACAATGACAAATATACAGCTGATAGAATCATGAGAGTCACAGTAGCTTTCAATCGTTTTGGCGATGGACTTGTTCAAAGAATGCCCAGGGTGAGACATGGGTATGCCCATGTTGCCAATAATTGGTACAACAAATGGCAAATGTACGCTGTGGGTGGCAGTGCAGATCCAACAATCTACAGCCAAGGAAACTACTTCATAGCTCCTGATGATGCAGTCTCAAAGCAGGTTACAAAGAGAGAGGTTTATGCGAGTGGATGGAAGAATTGGAAATGGAGGTCTTCAAATGATGTGTTTTTGAATGGGGCTTATTTTATCCCATCTGGTTGGGGAACTTGTACGCCATTCTACACTCGAGCTCAGTCATTTGCTGTGGCTCATGGCTCTTTGGTTCCTCTTTTGACTAATAGCGCTGGCGCTTTGAGTTGTGCCGTTGGTAAAGCTTGTTGA 1152 50.26 MAMAILYLIFFLATIIIPSHSMPYPYPYPNKRLALNPIDACWRTNPNWAANRRALANCAVGYGKDAIGGKFGSIYVVTDPSDDPEYPEPGTLRYGVIQTQPLWIVFAKDMVITPKRELMVNSFKTIDGRGAKVEIANGPCITIQNVSHVIIHGISIHDCKPGKPGRVRSSVNHCGERQVSDGDAISIFTSSHIWIDHCSLARCTDGLIDVIHASTAVTISNNYFTQHDKVILLGHNDKYTADRIMRVTVAFNRFGDGLVQRMPRVRHGYAHVANNWYNKWQMYAVGGSADPTIYSQGNYFIAPDDAVSKQVTKREVYASGWKNWKWRSSNDVFLNGAYFIPSGWGTCTPFYTRAQSFAVAHGSLVPLLTNSAGALSCAVGKAC 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52006376 52008091 + Lag0013683.1 Lac1g3191 596762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3191 383 Gene3D - 35 376 IPR012334 -
Lac1g3191 383 SUPERFAMILY Pectin lyase-like 36 374 IPR011050 -
Lac1g3191 383 Pfam Pectate lyase 116 300 IPR002022 -
Lac1g3191 383 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Lac1g3191 383 PRINTS Pollen allergen Amb family signature 117 133 IPR018082 -
Lac1g3191 383 PRINTS Pollen allergen Amb family signature 81 106 IPR018082 -
Lac1g3191 383 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Lac1g3191 383 PRINTS Pollen allergen Amb family signature 324 348 IPR018082 -
Lac1g3191 383 PRINTS Pollen allergen Amb family signature 354 377 IPR018082 -
Lac1g3191 383 PRINTS Pollen allergen Amb family signature 181 202 IPR018082 -
Lac1g3191 383 PRINTS Pollen allergen Amb family signature 261 280 IPR018082 -
Lac1g3191 383 PANTHER PECTATE LYASE 18-RELATED 14 380 IPR045032 GO:0030570(InterPro)
Lac1g3191 383 SMART amb_all 109 306 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0041 Lac-Chr10:448466 Lac1g3191 Lac-Chr1:52006376 9.30E-84 dispersed
Lac1g3191 Lac-Chr1:52006376 Lac8g2540 Lac-Chr8:43165558 7.40E-129 dispersed
Lac1g3191 Lac-Chr1:52006376 Lac10g0659 Lac-Chr10:5127099 1.70E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3191 K01728 - csv:101210816 645.966