Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3193 ATGGACAAAGGATGGGGTCTAACCCTTCGTGATTCCGATCAGTCAATTGGGTTCTTCTCAAACAAGCCACCGCCGCCCACTGTCAATTCCTTTCAGAGGATGTTTCAAGGTATTGAATTTGCCGGAAAACTTGGCCGGACTGACGACGACAACGCCGCTCCGCTTCCCTCCGATGAGAATCGCTTGGTTGTCAACGAGGTGGACTTTTTTTCCGATAAGAAAAGGGTGGTTGATGATACCAGGGAGGATCAAGACTCAAAATCTTCTATTAATATTATCGCTACCGCTGTCAATAAAGACGACAAGAATTTGACCGCTCCCAGAACTGGCTTCAATCTTGTTAATACTGGTTTGCATCTGTTAACTGCTAACACCGGAAGCGATCAATCAACGGTGGATGATGGGATTTCGTCAGATGGTGAAGATAAACGAGCCAAGAACGAGCTAGCGCAGCTTCAAGTGGAGCTCCAGCGTATAAACGCAGAGAATCACAAGCTTAGGGACATGCTAAGCCATGTGAGCAACAACTACAATACCCTACAAATGCATCTCTTGACCTTAATGCAACAGCAACAGCAACAGCAACAACAAAACCAGGCCACGGAACCCGCTCATGAACGAGAGATTGGCGAGAGGAAATCGACGGAAAAACATGAGGTTGGAAGAGTGGTAGTACCGAGGCAATTTATGGATCTAGGACCAAGTGGGAACACAGCCGAAACCGATGAATTATCTCATTCATCATCAGATGAAAGAACTCGTTCTGGGTCTCCATTAATGAACAACGCCGAAACCGCCTCCAAAAAGAGCACTGCAAGAGATCACGAAATCGCTCCTTCCGATCACGAGAATTCTAATTTCAGAGATGCCAAAAGATCATCCACCGCCAGAGAAGAAAGCCCCGAATCAGAATCTCACGCTTGGGGTCCTAATAAAGCCCCTCGATTGAACTCCTCTAAACCACTCGATCAATCCACCGAAGCCACCATGAGAAAAGCCCGTGTCTCAGTCCGTGCTCGATCAGAAGCTCCCATGATTTCTGATGGGTGTCAATGGCGAAAATATGGCCAAAAAATGGCCAAAGGAAACCCATGTCCACGGGCCTATTATCGATGCACAATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGATGTGCCGAGGACAGGACTATATTGATAACAACTTACGAAGGCAACCACAACCACCCACTTCCGCCGGCTGCGATGGCGATGGCGTCCACCACGACGGCGGCGGCCAGCATGTTGTTATCCGGGTCCATGTCGAGTGCGGACCATAATCTAATGAACCCAAATTTATTGGCTCGAGCCATACTCCCATGTTCCTCAAGCATGGCTACGATTTCAGCTTCGGCTCCATTTCCAACCATCACATTAGACCTCACTCACACCCCAAACCCACTGCAGTTCCAAAGACCGGCAGCGACGCCGTTCCACGTACCGTTCGCCGGCGGGCAACCACCGTCTGCCGCCGCAGCCGCCCAACTACCGCAGGTTTTGGGGCAGGCGTTGTACAATCAGTCAAAATTCTCGGGGCTACAGCTGTCCCATGAGATGGGAGCCAATTCCTCTCATTTGGGTCACCCCCAAATTGCACAGCCAGCAGCCGCGTCCCAGCCAGGTGGTGCTTCTTTTGCCGACACGTTGAGTGCCGCCACCGCCGCTATCACCGCCGATCCCAACTTCACCGCCGCGCTCGCCGCCGCTATCTCCTCCATCATCGGCGGAGCTCATTCAAATAACAACACCACCACCACCACCAATACTACTTCTACAACAACAAACAACAACAACGGAAGCAACAGCAGCAAAATTAGCAGTTTCCCTGGAAATTAA 1860 50.43 MDKGWGLTLRDSDQSIGFFSNKPPPPTVNSFQRMFQGIEFAGKLGRTDDDNAAPLPSDENRLVVNEVDFFSDKKRVVDDTREDQDSKSSINIIATAVNKDDKNLTAPRTGFNLVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKNELAQLQVELQRINAENHKLRDMLSHVSNNYNTLQMHLLTLMQQQQQQQQQNQATEPAHEREIGERKSTEKHEVGRVVVPRQFMDLGPSGNTAETDELSHSSSDERTRSGSPLMNNAETASKKSTARDHEIAPSDHENSNFRDAKRSSTAREESPESESHAWGPNKAPRLNSSKPLDQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTPNPLQFQRPAATPFHVPFAGGQPPSAAAAAQLPQVLGQALYNQSKFSGLQLSHEMGANSSHLGHPQIAQPAAASQPGGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNTTTTTNTTSTTTNNNNGSNSSKISSFPGN 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52027363 52029724 + Lag0013685.1 Lac1g3193 596764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3193 619 MobiDBLite consensus disorder prediction 317 331 - -
Lac1g3193 619 ProSiteProfiles WRKY domain profile. 341 407 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g3193 619 Gene3D WRKY domain 331 408 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g3193 619 SMART WRKY_cls 346 406 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g3193 619 MobiDBLite consensus disorder prediction 189 203 - -
Lac1g3193 619 SUPERFAMILY WRKY DNA-binding domain 339 407 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g3193 619 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 130 589 IPR044810 GO:0003700(InterPro)
Lac1g3193 619 MobiDBLite consensus disorder prediction 585 619 - -
Lac1g3193 619 MobiDBLite consensus disorder prediction 268 305 - -
Lac1g3193 619 MobiDBLite consensus disorder prediction 529 551 - -
Lac1g3193 619 MobiDBLite consensus disorder prediction 189 340 - -
Lac1g3193 619 MobiDBLite consensus disorder prediction 204 224 - -
Lac1g3193 619 Coils Coil 142 176 - -
Lac1g3193 619 MobiDBLite consensus disorder prediction 251 267 - -
Lac1g3193 619 FunFam probable WRKY transcription factor 31 331 408 - -
Lac1g3193 619 Pfam WRKY DNA -binding domain 348 405 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3193 Lac-Chr1:52027363 Lac3g0633 Lac-Chr3:4903828 1.30E-42 dispersed
Lac1g3193 Lac-Chr1:52027363 Lac12g0572 Lac-Chr12:6074606 6.50E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23366 PF03106 WRKY 5.50E-24 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3193 - - - 0.0