Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3205 ATGGGGAAGAAGAAGCTGAGGCTGCAAACTCAAGGCTCCCATGTTATACTGGATAATGGATTGTTGAAGGTGACGATATCAAACCCCCAAGGGTATGTGACTGGCATCAAGTATGCAGGCATGGACAATCTGTTAGATGTTAAATCAAGCGAGTCTAAAAGAGGATATTGGGATATCAACTGGAGTTGGCCTGGAGGCCAGGACAGATATGAATTGCTTAAAGGATCTGAATTTAATGTCATCAACACAAGTGATGACACGATTGAAATATCGTTCAGGAAAGTTTTCGATCCGTTGACTCGAGGCAACAAACTTCCACTTGGTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATAGCTATGCAATCTACGAGCACCCGTCAGAATGCCGGGCTTTCGATCTTGCTCAGACAAGAATGGTGTTCAAATTGCGACAAGAGAAGTTCCACTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCGTCCAGGCAGAGGTGAACAACTAATTGTACCCGAGTCAGTTCTGCTTGTAAATCCCATTAATCCTGATCTAAAAGGAGAGGTAGATGATAAATACCAATACTCAGTGGATAATAAAGATGGAGGAGTTCATGGATGGATAAGTTCTAGCCCAAACAACATAGGTTTTTGGGTCATTTTTCCAAGCCACGAGTTTCGAAATGGCGGCCCTACAAAGCAAAATCTGACAGTCCATACTGGACCTACATGTCTTGCTATGTTTCATGGAACCCATTACATTGGAGAAGACATACTCACACATATTAAGGAGGGAGAGACATGGAGAAAGGTCTTTGGTCCTTTTCTTGTATACCTTAACTCCACCTCAGATGTATCAGAAGCACACAATTTATGGATAGATGCAAAAGAACAGAGAATGATAGAGGAAACAGCATGGCCCTATAATTTTGTCACCTCATCTTTCTATTTCATGGCAAATGAAAGAGGTTCCATTTCAGGAAGACTATTAGTCCAAGACAGGTATATTTCAAGTTCCCCCATCCCTGCTAGAGATGCACATATTGGTTTATCCGCTGCTAGAGAGGCAGGTGCCTGGCAAACAGAGAGCAAGGAATATCAATTTTGGGTACAAACAGACTCCAATGGAGATTTCACTATCAGAAACATTATTCCTGGTGTCTATGGACTTCATGGTTGGGTACCTGGATTCATTGGTGATTATCTTCACAAATCACTAGTAGCAGTATCTGCAGGATCTCATACACATCTTGGCATTCTGACCTACAGTCCCCTCAGAGATGGTCCTACTTTATGGGAGATTGGTTTTCCTGAACGTACAGCTAATAGCTTCTATGTTCCTGATGTGAATCCGATGTATGTCAACAAGTTATTTCTTCACAGCCCTGAAAAGTTCCGGCAATATGGTTTGTGGGAGAGATATAGTGATTTGCATCCACTAAATGACCAAGTTTTCATTGTGGGTATCAATGATCCGAAGAAAGACTGGTTCTTTGCTCAAGTTTGCAGGAAAGGGGAAGACGGTGAGTATGTAGCGACGACATGGACAATTAAGTTCAACATGACATCATTAACCAATGGAACTTATCAGCTGAGATTGGCCATTGCATCTGCAACACGCTCGGACATGAAGGTTAATGTCAACTCAATGGGGTCGGAGTCTTTGGTTTTCCAGCTGATGAATCTGGGAATGGATAACACAGTTTGCCGACATGGAAATCATGGACTTTATCGAATTTATAGTATTAACATTCCATCTTCATTGCTTGTTAAGGGAGATAACTCCATATTTCTCACGCAGGCAAGGCGTGGAGATGCACTCTGTGGAATTTTATACGATTATTTAAGATTGGAAGCTCCTGATACTCCATGA 1905 41.99 MGKKKLRLQTQGSHVILDNGLLKVTISNPQGYVTGIKYAGMDNLLDVKSSESKRGYWDINWSWPGGQDRYELLKGSEFNVINTSDDTIEISFRKVFDPLTRGNKLPLGVDIRYIMRTGIPGFYSYAIYEHPSECRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLRPGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSVDNKDGGVHGWISSSPNNIGFWVIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGETWRKVFGPFLVYLNSTSDVSEAHNLWIDAKEQRMIEETAWPYNFVTSSFYFMANERGSISGRLLVQDRYISSSPIPARDAHIGLSAAREAGAWQTESKEYQFWVQTDSNGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVAVSAGSHTHLGILTYSPLRDGPTLWEIGFPERTANSFYVPDVNPMYVNKLFLHSPEKFRQYGLWERYSDLHPLNDQVFIVGINDPKKDWFFAQVCRKGEDGEYVATTWTIKFNMTSLTNGTYQLRLAIASATRSDMKVNVNSMGSESLVFQLMNLGMDNTVCRHGNHGLYRIYSINIPSSLLVKGDNSIFLTQARRGDALCGILYDYLRLEAPDTP 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52095092 52098738 + Lag0013697.1 Lac1g3205 596776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3205 634 CDD RGL4_M 332 429 IPR029413 -
Lac1g3205 634 Gene3D - 329 431 - -
Lac1g3205 634 SUPERFAMILY Galactose mutarotase-like 8 294 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Lac1g3205 634 Pfam Polysaccharide lyase family 4, domain II 357 427 IPR029413 -
Lac1g3205 634 CDD RGL4_N 6 299 - -
Lac1g3205 634 Gene3D - 6 306 IPR014718 GO:0030246(InterPro)
Lac1g3205 634 SUPERFAMILY Starch-binding domain-like 327 430 IPR013784 GO:0030246(InterPro)
Lac1g3205 634 Pfam Polysaccharide lyase family 4, domain III 441 628 IPR029411 -
Lac1g3205 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 632 IPR051850 -
Lac1g3205 634 SUPERFAMILY Galactose-binding domain-like 438 629 IPR008979 -
Lac1g3205 634 CDD RGL4_C 443 629 - -
Lac1g3205 634 Gene3D - 439 629 - -
Lac1g3205 634 Pfam Rhamnogalacturonate lyase family 3 200 IPR010325 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3205 Lac-Chr1:52095092 Lac2g0798 Lac-Chr2:6247878 9.80E-203 dispersed
Lac1g3205 Lac-Chr1:52095092 Lac6g0987 Lac-Chr6:8946403 2.30E-199 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3205 K18195 - csv:101220336 1221.84