Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g3205 | ATGGGGAAGAAGAAGCTGAGGCTGCAAACTCAAGGCTCCCATGTTATACTGGATAATGGATTGTTGAAGGTGACGATATCAAACCCCCAAGGGTATGTGACTGGCATCAAGTATGCAGGCATGGACAATCTGTTAGATGTTAAATCAAGCGAGTCTAAAAGAGGATATTGGGATATCAACTGGAGTTGGCCTGGAGGCCAGGACAGATATGAATTGCTTAAAGGATCTGAATTTAATGTCATCAACACAAGTGATGACACGATTGAAATATCGTTCAGGAAAGTTTTCGATCCGTTGACTCGAGGCAACAAACTTCCACTTGGTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATAGCTATGCAATCTACGAGCACCCGTCAGAATGCCGGGCTTTCGATCTTGCTCAGACAAGAATGGTGTTCAAATTGCGACAAGAGAAGTTCCACTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCGTCCAGGCAGAGGTGAACAACTAATTGTACCCGAGTCAGTTCTGCTTGTAAATCCCATTAATCCTGATCTAAAAGGAGAGGTAGATGATAAATACCAATACTCAGTGGATAATAAAGATGGAGGAGTTCATGGATGGATAAGTTCTAGCCCAAACAACATAGGTTTTTGGGTCATTTTTCCAAGCCACGAGTTTCGAAATGGCGGCCCTACAAAGCAAAATCTGACAGTCCATACTGGACCTACATGTCTTGCTATGTTTCATGGAACCCATTACATTGGAGAAGACATACTCACACATATTAAGGAGGGAGAGACATGGAGAAAGGTCTTTGGTCCTTTTCTTGTATACCTTAACTCCACCTCAGATGTATCAGAAGCACACAATTTATGGATAGATGCAAAAGAACAGAGAATGATAGAGGAAACAGCATGGCCCTATAATTTTGTCACCTCATCTTTCTATTTCATGGCAAATGAAAGAGGTTCCATTTCAGGAAGACTATTAGTCCAAGACAGGTATATTTCAAGTTCCCCCATCCCTGCTAGAGATGCACATATTGGTTTATCCGCTGCTAGAGAGGCAGGTGCCTGGCAAACAGAGAGCAAGGAATATCAATTTTGGGTACAAACAGACTCCAATGGAGATTTCACTATCAGAAACATTATTCCTGGTGTCTATGGACTTCATGGTTGGGTACCTGGATTCATTGGTGATTATCTTCACAAATCACTAGTAGCAGTATCTGCAGGATCTCATACACATCTTGGCATTCTGACCTACAGTCCCCTCAGAGATGGTCCTACTTTATGGGAGATTGGTTTTCCTGAACGTACAGCTAATAGCTTCTATGTTCCTGATGTGAATCCGATGTATGTCAACAAGTTATTTCTTCACAGCCCTGAAAAGTTCCGGCAATATGGTTTGTGGGAGAGATATAGTGATTTGCATCCACTAAATGACCAAGTTTTCATTGTGGGTATCAATGATCCGAAGAAAGACTGGTTCTTTGCTCAAGTTTGCAGGAAAGGGGAAGACGGTGAGTATGTAGCGACGACATGGACAATTAAGTTCAACATGACATCATTAACCAATGGAACTTATCAGCTGAGATTGGCCATTGCATCTGCAACACGCTCGGACATGAAGGTTAATGTCAACTCAATGGGGTCGGAGTCTTTGGTTTTCCAGCTGATGAATCTGGGAATGGATAACACAGTTTGCCGACATGGAAATCATGGACTTTATCGAATTTATAGTATTAACATTCCATCTTCATTGCTTGTTAAGGGAGATAACTCCATATTTCTCACGCAGGCAAGGCGTGGAGATGCACTCTGTGGAATTTTATACGATTATTTAAGATTGGAAGCTCCTGATACTCCATGA | 1905 | 41.99 | MGKKKLRLQTQGSHVILDNGLLKVTISNPQGYVTGIKYAGMDNLLDVKSSESKRGYWDINWSWPGGQDRYELLKGSEFNVINTSDDTIEISFRKVFDPLTRGNKLPLGVDIRYIMRTGIPGFYSYAIYEHPSECRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLRPGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSVDNKDGGVHGWISSSPNNIGFWVIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGETWRKVFGPFLVYLNSTSDVSEAHNLWIDAKEQRMIEETAWPYNFVTSSFYFMANERGSISGRLLVQDRYISSSPIPARDAHIGLSAAREAGAWQTESKEYQFWVQTDSNGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVAVSAGSHTHLGILTYSPLRDGPTLWEIGFPERTANSFYVPDVNPMYVNKLFLHSPEKFRQYGLWERYSDLHPLNDQVFIVGINDPKKDWFFAQVCRKGEDGEYVATTWTIKFNMTSLTNGTYQLRLAIASATRSDMKVNVNSMGSESLVFQLMNLGMDNTVCRHGNHGLYRIYSINIPSSLLVKGDNSIFLTQARRGDALCGILYDYLRLEAPDTP | 634 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 52095092 | 52098738 | + | Lag0013697.1 | Lac1g3205 | 596776 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g3205 | 634 | CDD | RGL4_M | 332 | 429 | IPR029413 | - | |
Lac1g3205 | 634 | Gene3D | - | 329 | 431 | - | - | |
Lac1g3205 | 634 | SUPERFAMILY | Galactose mutarotase-like | 8 | 294 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Lac1g3205 | 634 | Pfam | Polysaccharide lyase family 4, domain II | 357 | 427 | IPR029413 | - | |
Lac1g3205 | 634 | CDD | RGL4_N | 6 | 299 | - | - | |
Lac1g3205 | 634 | Gene3D | - | 6 | 306 | IPR014718 | GO:0030246(InterPro) | |
Lac1g3205 | 634 | SUPERFAMILY | Starch-binding domain-like | 327 | 430 | IPR013784 | GO:0030246(InterPro) | |
Lac1g3205 | 634 | Pfam | Polysaccharide lyase family 4, domain III | 441 | 628 | IPR029411 | - | |
Lac1g3205 | 634 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 3 | 632 | IPR051850 | - | |
Lac1g3205 | 634 | SUPERFAMILY | Galactose-binding domain-like | 438 | 629 | IPR008979 | - | |
Lac1g3205 | 634 | CDD | RGL4_C | 443 | 629 | - | - | |
Lac1g3205 | 634 | Gene3D | - | 439 | 629 | - | - | |
Lac1g3205 | 634 | Pfam | Rhamnogalacturonate lyase family | 3 | 200 | IPR010325 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g3205 | Lac-Chr1:52095092 | Lac2g0798 | Lac-Chr2:6247878 | 9.80E-203 | dispersed | |
Lac1g3205 | Lac-Chr1:52095092 | Lac6g0987 | Lac-Chr6:8946403 | 2.30E-199 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g3205 | K18195 | - | csv:101220336 | 1221.84 |