Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g3212 | ATGGCTTGCTCAAACTTGGCAATGTGGGTATCCTCGAAACCGTCTCCATCCGATGCTTCCGCTCTTTCTTTCCGGTCTTTTAACCCTCTTCAAGTTCCTTCGCAAGGCTCTCCTTCGCGATCCTCATCTGTCACTCCGATTCAGTGTGGCCTCCGTGAGCTTCGAGAACGGATCGATTCAGTGAAGAACACCCAGAAGATTACTGAGGCTATGAAGCTTGTTGCTGCTGCCAAAGTGCGTAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCATTTTCGGAATCTTTAGTTGAAGTTCTTTACAACATCAACGAGCAGCTCCAAACCGAAGATATAGATGTTCCTCTAACAAAAGTCCGACCGGTCAAGAAGGTTGCTTTGATTGTTGTAACAGGGGATCGAGGCCTCTGCGGCAGTTTCAATAACATGATCATCAAAAAGGCAGAATCCAGAATCGCAGAATTGAAGACCCTTGGCCTTGATTATACAGTTATTAGCGTCGGCAAGAAAGGGAATTCGTATTTCCTTCGCCGGCCTTACATTCCAGTAGATAGATTTCTTGAGGGCGGTTCACTTCCCACTGCTAAAGAAGCTCAAGCCATTGCAGACGATGTCTTTTCCCTCTTTATAAGCGAAGAGGTTGACAAAGTCGAGCTTCTGTACACCAAATTCGTGTCATTGGTTAAATCCGACCCTGTGATCCACACTCTGCTTCCATTGTCACCAAAAGGAGAGATTTGTGATATAAATGGTGTTTGTGTCGATGCCGCAGAAGACGAGTTCTTCAGATTGACGACAAAAGAAGGAAAATTGACCGTAGAGAGAGATGCTGTGAGGACAAAGACCTCAGATTTCTCCCCAATTTTGCAGTTTGAGCAGGACCCAGTTCAGATTCTTGATGCTTTATTACCTCTCTATTTGAACAGTCAAATTTTGAGGTCATTACAGGAGTCATTAGCTAGTGAACTTGCGGCCAGAATGAGCGCCATGAGCAATGCGACTGATAACGCGAGCGAGTTGAAGAAGACGCTCTCTATTGTTTACAACAGACAGCGTCAAGCCAAAATCACTGGCGAGATTTTGGAGATTGTTGCTGGTGCCAATGCTTTGACTTGA | 1116 | 45.34 | MACSNLAMWVSSKPSPSDASALSFRSFNPLQVPSQGSPSRSSSVTPIQCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEVLYNINEQLQTEDIDVPLTKVRPVKKVALIVVTGDRGLCGSFNNMIIKKAESRIAELKTLGLDYTVISVGKKGNSYFLRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDAVRTKTSDFSPILQFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSNATDNASELKKTLSIVYNRQRQAKITGEILEIVAGANALT | 371 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 52151623 | 52152738 | - | Lag0013704.1 | Lac1g3212 | 596783 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g3212 | 371 | FunFam | ATP synthase gamma chain, chloroplastic | 49 | 116 | - | - | |
| Lac1g3212 | 371 | NCBIfam | ATP synthase F1 subunit gamma | 50 | 370 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Lac1g3212 | 371 | Hamap | ATP synthase gamma chain [atpG]. | 48 | 370 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Lac1g3212 | 371 | Pfam | ATP synthase | 51 | 370 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Lac1g3212 | 371 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 50 | 117 | - | - | |
| Lac1g3212 | 371 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 50 | 370 | IPR035968 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Lac1g3212 | 371 | Gene3D | - | 118 | 241 | - | - | |
| Lac1g3212 | 371 | Coils | Coil | 51 | 71 | - | - | |
| Lac1g3212 | 371 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 1 | 370 | IPR000131 | GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro) | |
| Lac1g3212 | 371 | FunFam | ATP synthase gamma chain, chloroplastic | 118 | 241 | - | - | |
| Lac1g3212 | 371 | CDD | F1-ATPase_gamma | 51 | 367 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Lac1g3212 | 371 | PRINTS | ATP synthase gamma subunit signature | 348 | 369 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Lac1g3212 | 371 | PRINTS | ATP synthase gamma subunit signature | 215 | 232 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Lac1g3212 | 371 | PRINTS | ATP synthase gamma subunit signature | 122 | 141 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Lac1g3212 | 371 | PRINTS | ATP synthase gamma subunit signature | 317 | 336 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Lac1g3212 | 371 | ProSitePatterns | ATP synthase gamma subunit signature. | 356 | 369 | IPR023632 | - | |
| Lac1g3212 | 371 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 268 | 370 | - | - | |
| Lac1g3212 | 371 | FunFam | ATP synthase gamma chain, chloroplastic | 267 | 370 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g3212 | Lac-Chr1:52151623 | Lac5g1345 | Lac-Chr5:26891965 | 1.40E-105 | dispersed | |
| Lac1g3212 | Lac-Chr1:52151623 | Lac10g0684 | Lac-Chr10:5275958 | 2.10E-173 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac1g3212 | K02115 | - | csv:101218747 | 673.315 |