Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3227 ATGATCTCTTCACTGAGGCTCACTCCATCCAATTTCACTTCCTCTGAACTTCTCAATCGAAAATCTCCGATTTCGAGGCCGAATCTTCCGTTGCAGTCGCTAAATTGTAGCGCCCTGAAACATCTCGATCGATCTATTTCTACCAACAAGCCACTTCACATCTCGTCCGTTGAGGATCTTTCTTTGCCCACAAAATCGTCTGAGCGTTCAACGGAGTGCAGGGCGTACGAGGCCGAATCGCGGCCTCTTGAGATTAACATTGAGCTTCCCGATGAACAGACGGCACAGAAACTCAAAATTGGGCTCTATTTCGCCACTTGGTGGGCTTTGAATGTGGTGTTCAATGTCTACAACAAGAAGGTTCTTAATGCGTTCCCTTATCCATGGCTCACCTCCACTCTGTCCCTCGCCGCTGGATCGCTCATGATGCTCGTTTCTTGGGCCACTAGAATGGTCGACGCTCCCAAAACCGATTTGGATTTCTGGAAATCCCTATTGCCGGTCGCTGTGGCGCATACCATCGGGCATGTTGCAGCAACTGTGAGCATGTCCAAAGTTGCAGTCTCATTCACTCACATAATCAAGAGTGGGGAGCCGGCTTTCAGCGTGTTGGTGTCAAGGTTTCTGTTGGGTGAGACGTTTCCATTGCCTGTTTACTTGTCTCTTATCCCAATCATTGGAGGCTGCGCTCTTTCCGCCATTACCGAGCTCAATTTCAACATGATCGGTTTCATGGGAGCGATGATATCGAACTTGGCATTTGTGTTTAGAAACATATTCTCAAAGAAAGGGATGAAGGGAAAGTCAGTGAGCGGGATGAATTACTATGCTTGCCTCTCATTGCTGTCTCTGCTCATTCTCACTCCTTTCGCCATTGCTGTGGAGGGACCCAAGTTGTGGGCTGAAGGGTTCCAAAAGGCTCTCTCTCAAATTGGTCCCAATTTCATTTGGTGGGTGGGAGCTCAAAGTATGTTCTATCACTTGTACAATCAAGTGTCTTACATGTCTCTTGATCAGATATCTCCATTGACATTCAGCGTAGGAAACACAATGAAGAGAATATTCGTAATAGTGTCGTCCATCATCATCTTCCACACGCCCGTCCGACCCATCAACGCTATTGGCGCTGCCATTGCAATCCTGGGAACCTTCCTCTACTCGCAGGCAAAGCTGTGA 1176 47.96 MISSLRLTPSNFTSSELLNRKSPISRPNLPLQSLNCSALKHLDRSISTNKPLHISSVEDLSLPTKSSERSTECRAYEAESRPLEINIELPDEQTAQKLKIGLYFATWWALNVVFNVYNKKVLNAFPYPWLTSTLSLAAGSLMMLVSWATRMVDAPKTDLDFWKSLLPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPLPVYLSLIPIIGGCALSAITELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSLLSLLILTPFAIAVEGPKLWAEGFQKALSQIGPNFIWWVGAQSMFYHLYNQVSYMSLDQISPLTFSVGNTMKRIFVIVSSIIIFHTPVRPINAIGAAIAILGTFLYSQAKL 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52232091 52233931 - Lag0013719.1 Lac1g3227 596798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3227 391 Pfam Triose-phosphate Transporter family 98 387 IPR004853 -
Lac1g3227 391 PANTHER SOLUTE CARRIER FAMILY 35 96 390 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Lac1g3227 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 284 388 - -
Lac1g3227 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 140 234 - -
Lac1g3227 391 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 98 390 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3227 Lac-Chr1:52232091 Lac5g1426 Lac-Chr5:28551689 2.70E-155 dispersed
Lac13g0371 Lac-Chr13:2633022 Lac1g3227 Lac-Chr1:52232091 1.50E-66 transposed
Lac1g3358 Lac-Chr1:53222348 Lac1g3227 Lac-Chr1:52232091 6.10E-63 transposed
Lac7g0352 Lac-Chr7:2718983 Lac1g3227 Lac-Chr1:52232091 9.00E-88 transposed
Lac1g3227 Lac-Chr1:52232091 Lac2g1379 Lac-Chr2:11655710 4.70E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3227 K15283 - csv:101216621 664.84