Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3228 ATGTTCGATCCAGATATGTTCGACACTACGCACCATCATATGCTTGATATGGCCTTCAACACCTCTGAAAACGAAATGGAAAATGTTAGAGACGATGATTTTGAAACGAAATCGGGCGCAGAAATCTTAGAGGCTGCTTGTGGGAGTGACCAACGCTCCAAAAAGAAACGTTACAATCGCCATACGCAGCACCAAATCCAAGAAATGGAAGCATTCTTTAAAGAGTGTCCTCACCCAGATGACAAGCAGAGAATGGAGCTGAGCCGCGAGCTGGGGTTGGAGCCATTGCAAGTCAAGTTTTGGTTTCAAAACAAGCGCACCCAGATGAAGGCACAACATGAGAGACATGAAAACGCCATATTGAAAGCTGAAAATGAAAAGCTTCGTGCTGAGAATATTAGATACCGGGAAGCATTCGCCCATTCAACCTGCCCCAACTGCGGATCCTCCACTGCCCTCGGCGAAATGTCCTTTGAAGACCAACATTTGCGCATTGAAAATTCCCGTTTGCGAGATGAGATCGACAGAATGAGTGGATACGGTTCAAAATGCGTAGCAAAGCCGCTGCCTTCTTCATACTATCACCTTCCGTCGAATGCGCCGACGAGATCTCTGGACTTGGGCATCACAAATTTCGGTCAACAGTCAGGTTTCGTGGGAGAAATGTACGGAGCCGCCGACTTTCTCCGGTCGATTTCGAGACCTTCGGAAGCCGACAAGCCGGTTATCGTGGAGCTGGCCGTTTCGGCCATGGAGGAACTGACCCGAATGGCTCAGGCCGGCGAACCGTTGTGGGTTCCGGCGGAAAACAAGTCCACGGAGCTGCTTCTTAACGAAGCCGAGTATTTGACGAGTTTCCGAGGCGGAATTGGGCCGAAGCCGTTGGGCTTGAGAACTGAAGCTTCACGAGTTTCGGCTATTGTTTTCATGAACCATATTAAGCTTGTGGATATTTTTATGGATGCTACGCAATGGTCAACTGTGTTCTGTGGCATTGTTTCGAGAGCATCGACTGTGGAAGTTCTTTCAGCTGGATTACCAGGAAACTGCAACGGGGCCTTGCATGTGATGAGCGCCGAATTCCAAGTCCCTTCGCCGCTGGTTCCGACACGTGAAAATTACTTCGTAAGATACTGCAAACAGCACAACGACGGCACATGGGCCGTGGCTGATGTTTCCTTGGACAGCCTGCGCCCTTCTCCCATCCCAAAGAGCCGAAGAAGACCCTCTGGTTGTTTAATTCAAGAATTGCCCAACGGCTATTCAAAGATCACTTGGGTTGAACACGTAGAGGTGGACGAAACTGGCGTGCCCACAATGTACAGACCGCTCGTTAATTCAGGCCTCGCTTTTGGGGCAAAACGCTGGGTGGCTACCTTAGATAGGCAATGTGAACGCTTAGCCACTTCAATGGCCACCACCATAACCACCGGCGAACTACGCGTGATATCAAGTATTGAAGGGAGGAAGAGTATGCTGAAGCTAGCCGAGAGAATGGTGACGAGCTTCTGCGCCGGCGTCGGCGCCTCGAGTGTACACGCTTGGACGGCGCTACCGGCAGCTGGCAGCGATGATGTTCGAGTTGTCACAAGGAAGAGCACCGACGAACCTGGCCGACCACCTGGTGTAGTTCTTAGCGCCGCCACTTCTTTTTGGATCCCTGTTCCTCCTAAGGTCGTCTTTGATTTCCTTCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAATGGAGGCTTAGTTCAGGAAATGGCGCACATAGCCAACGGTCGCCATTCTGGGAACTGTGTCTCGTTGCTCCGTGTCAATAGTGTGAACTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACCGACTCTACAGGATCGTACGTTATTTATGCTCCGGTTGACACGGTTGCAATGAACGTGGTGCTAAGCGGTTGCGACCCTGATTATGTGGCGCTTCTACCGTCGGGATTCGCCATACTTCCCGACGGACCCGCCGGAAGCAACGGCGGAGGAATTCTCGAGGTCGGCTCCGGTGGGTCACTCATCACTGTTGCATTTCAAATTCTGGTGGATTCAGTTCCAACGGCTAGACTTTCAATTGGATCAGTGGCCACCGTTAACAGTCTGATTAAGTGTACGGTTGAAAGGATCAGAGCCGCTGTGATGCGTGAAAACCCATGA 2181 50.89 MFDPDMFDTTHHHMLDMAFNTSENEMENVRDDDFETKSGAEILEAACGSDQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRAENIRYREAFAHSTCPNCGSSTALGEMSFEDQHLRIENSRLRDEIDRMSGYGSKCVAKPLPSSYYHLPSNAPTRSLDLGITNFGQQSGFVGEMYGAADFLRSISRPSEADKPVIVELAVSAMEELTRMAQAGEPLWVPAENKSTELLLNEAEYLTSFRGGIGPKPLGLRTEASRVSAIVFMNHIKLVDIFMDATQWSTVFCGIVSRASTVEVLSAGLPGNCNGALHVMSAEFQVPSPLVPTRENYFVRYCKQHNDGTWAVADVSLDSLRPSPIPKSRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRPLVNSGLAFGAKRWVATLDRQCERLATSMATTITTGELRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPAAGSDDVRVVTRKSTDEPGRPPGVVLSAATSFWIPVPPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVSLLRVNSVNSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPAGSNGGGILEVGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52245567 52250836 - Lag0013720.1 Lac1g3228 596799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3228 726 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677(InterPro)
Lac1g3228 726 Pfam START domain 246 466 IPR002913 GO:0008289(InterPro)
Lac1g3228 726 Gene3D - 292 472 IPR023393 -
Lac1g3228 726 CDD START_ArGLABRA2_like 240 465 - -
Lac1g3228 726 FunFam Homeobox-leucine zipper protein HDG1 44 128 - -
Lac1g3228 726 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac1g3228 726 SMART HOX_1 53 116 IPR001356 GO:0003677(InterPro)
Lac1g3228 726 FunFam Homeobox-leucine zipper protein GLABRA 2 245 465 - -
Lac1g3228 726 SUPERFAMILY Bet v1-like 238 467 - -
Lac1g3228 726 SUPERFAMILY Homeodomain-like 46 112 IPR009057 -
Lac1g3228 726 ProSiteProfiles START domain profile. 236 469 IPR002913 GO:0008289(InterPro)
Lac1g3228 726 SMART START_1 245 466 IPR002913 GO:0008289(InterPro)
Lac1g3228 726 Coils Coil 106 138 - -
Lac1g3228 726 CDD homeodomain 54 113 IPR001356 GO:0003677(InterPro)
Lac1g3228 726 Pfam Homeodomain 55 110 IPR001356 GO:0003677(InterPro)
Lac1g3228 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 48 721 IPR042160 -
Lac1g3228 726 SUPERFAMILY Bet v1-like 488 718 - -
Lac1g3228 726 Gene3D - 44 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3228 Lac-Chr1:52245567 Lac7g0267 Lac-Chr7:2084203 5.60E-178 dispersed
Lac1g3228 Lac-Chr1:52245567 Lac10g0711 Lac-Chr10:5486944 8.90E-285 wgd
Lac1g3228 Lac-Chr1:52245567 Lac12g0611 Lac-Chr12:6484005 9.90E-284 wgd
Lac1g3228 Lac-Chr1:52245567 Lac2g1376 Lac-Chr2:11625358 4.00E-107 wgd
Lac1g3228 Lac-Chr1:52245567 Lac9g2062 Lac-Chr9:40201422 1.10E-282 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23368 PF01852 START 1.30E-51 CL0209 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3228 K09338 - csv:101209093 1259.2