Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3230 ATGGCGATGACGACCCATCAGCCTCTTCTTCAACCCCCCAAAACTACCCGCTCCAAAACCTTCTCCACAATCCTCTCTTTTTCTGCAATTTTCTGCTCAGCCATTTTCATTACCAACAAATTGATCGAATCAAACCCATCTCAAACTGTAAATGATCAGCCCTTCCTTCACACCATCTGCCACAAGGCTTACAACCCATCATCCTGCATTGAAATGGCCGCCTCAGAGTTCCCCTTACACCAAGAAACGAAAACGAAGAACGGGGCTCATTTCTTACAATTTTTCCTGAGCAAATCCTTAGCGAAAGTCATTAACACAATCGAGAGCGCCAGAGACCTCAGTCGTAGAATCAACATCCCTCGCGGGGAAGCGGCTCTGGCTGATTGCGTCGAGCTCATGGAGATCTCGATGGACCGAATAGCGGACTCGATTTCGGCTCTGAAAAACAGAACGAGCGGCTCGATCGAAAACGCGCACACATGGCTGAGCAGCGTGCTGACGAACCACATGACGTGCTCGGATGAGGTCGAGAATTCAATTCCGAGAGCGGCGGGCATGGATCTGGGGCTTGAAGAGCTGATTCTGAGAGGGAGAAATTCACTGGGGATTTTGGTTTCGATTTGGGGATCGGAGATGGAAGAGAATGGGAATGGGTATCCGAATTGGTTGAAGAGCGGAGATCGGAGGCTGTTGGGGCTTATGGGGAGAGAAATGGAAGCGAATATAGTGGTGGCGAAGGATGGGAGTGGGAATTTCAAGACGGTGAAGGAGGCGGTTGAGGCGATTCCAGACAAGAGTAAGAGTAGAATTGTTATATATGTGAAGAAGGGGATTTATGAAGAGAATGTGGAAATTGGGAAGAAGAAGAAGAATGTGATGATCATCGGCGATGGAATGGATTCCACCATTATCACTGCTAGCCTCAACGTTGTTGATGGATCAACTACTTTTAAATCTGCAACTGTTGCTGCCGTGGGAGATGGATTTATAGCCCAAGACATCGGCTTCAGAAACACCGCCGGGCCGGAAAAGCACCAAGCGGTGGCGCTTCGGGTCGGAGCAGACCAAGCCGTCATAAACCGGTGTCGTATCGACGCTTATCAAGACACTCTCTACACACATTCCAACCGCCAGTTCTACCGAGACTGCACCATCACCGGCACCGTGGACTTCATTTTCGGCAACGCCGCCGTTGTACTACAGAACTGCAAAATCGAACCCCGACGGCCCATGAGCAACCAGGCCAACATGGTGACGGCCCAAAGCCGAATCGACCCAAATCAGAACACGGGAACTTCAATCCAGCAATGCCAAATCGTCGCAAGCTCCGACCTCGAGCCCGTTAAGCGGTCCATTAAGACTTATTTGGGCCGCCCATGGAAGGAGTATTCGAGGACCGTCGTTATGCAGTCCAAAATTGGCGGTCTTATAGATCCAGCGGGCTGGGCCGAGTGGAACGGAGACTTTGCATTGAAGACTCTGTATTACGGTGAGTATTCGAATAATGGGCCGGGCTCTGATGTTAGCAAACGAGTAAAATGGCCTGGTTACCATGTCATTACGAGCCCATCTGAGGCCCAAAAGTTCACAGTGGACTCGCTTATACAAGGAGGCGACTGGCTGGGCGCCTCAGGCGTGACTTTTATCCCAGGGCTGTGA 1659 50.69 MAMTTHQPLLQPPKTTRSKTFSTILSFSAIFCSAIFITNKLIESNPSQTVNDQPFLHTICHKAYNPSSCIEMAASEFPLHQETKTKNGAHFLQFFLSKSLAKVINTIESARDLSRRINIPRGEAALADCVELMEISMDRIADSISALKNRTSGSIENAHTWLSSVLTNHMTCSDEVENSIPRAAGMDLGLEELILRGRNSLGILVSIWGSEMEENGNGYPNWLKSGDRRLLGLMGREMEANIVVAKDGSGNFKTVKEAVEAIPDKSKSRIVIYVKKGIYEENVEIGKKKKNVMIIGDGMDSTIITASLNVVDGSTTFKSATVAAVGDGFIAQDIGFRNTAGPEKHQAVALRVGADQAVINRCRIDAYQDTLYTHSNRQFYRDCTITGTVDFIFGNAAVVLQNCKIEPRRPMSNQANMVTAQSRIDPNQNTGTSIQQCQIVASSDLEPVKRSIKTYLGRPWKEYSRTVVMQSKIGGLIDPAGWAEWNGDFALKTLYYGEYSNNGPGSDVSKRVKWPGYHVITSPSEAQKFTVDSLIQGGDWLGASGVTFIPGL 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52275564 52277384 - Lag0013722.1 Lac1g3230 596801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3230 552 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Lac1g3230 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 204 IPR035513 -
Lac1g3230 552 NCBIfam pectinesterase inhibitor domain 25 176 IPR006501 GO:0004857(InterPro)
Lac1g3230 552 PANTHER PECTINESTERASE 25 541 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac1g3230 552 CDD PMEI-like_4 59 207 - -
Lac1g3230 552 Gene3D - 235 552 IPR012334 -
Lac1g3230 552 FunFam Pectinesterase 235 552 - -
Lac1g3230 552 Pfam Pectinesterase 241 537 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac1g3230 552 Pfam Plant invertase/pectin methylesterase inhibitor 55 178 IPR006501 GO:0004857(InterPro)
Lac1g3230 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 179 IPR035513 -
Lac1g3230 552 SMART PMEI_2 51 203 IPR006501 GO:0004857(InterPro)
Lac1g3230 552 SUPERFAMILY Pectin lyase-like 239 551 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2509 Lac-Chr12:42052130 Lac1g3230 Lac-Chr1:52275564 3.10E-115 dispersed
Lac1g3230 Lac-Chr1:52275564 Lac4g2484 Lac-Chr4:44164172 4.60E-124 dispersed
Lac1g3230 Lac-Chr1:52275564 Lac11g1717 Lac-Chr11:31201364 1.10E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3230 K01051 - csv:101216377 924.85