Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3243 ATGGCGACATGGAAAACTCTTCTTCTTCTTCACAGCATTTTTCTGATCCACATGGCTTCTCCCACCATTTCCCAACTAGACTTCGCCAGATCCTTATGTCCAGACGCCGCCAACTACACCGCCAATTCCACTTACCGCAAAAACCTCCAAAACCTACTTTCTTCCATCTCCTCCGAACCCCAGTTACTAACTTTCGGCTTTCACACTCTCTCCGCCGGCGAAGAACCCGACAAGGTCAACGCCGCCGTCCTCTGCCGCGGAGACCTCTCCGCCGACATATGCAAAAGCTGCGTAGAAGACTCGACCCATAAAATCCTACAGGTCTGCCCCAACCAGAAGGCCGCAATCGTGTGGTACAATCAGTGCATGCTTCGGTTCTCGGACACCGAGATTCTCGGCGTTATGAACAATTTGGATTCGCAGTCGATTTTCAACGGGCGAAAGGCATCGGACCCGAATAAGTTTCTTGAGGCAGTGAGGAGTTTGATGAACAGATTGAGAGAAGAGGCTGCGTCGGGGAATTCTACACGGAAATTTGCTACCGGAAAGGTTCCGGCTGGCAATGAAACGGTGTACGGGCTTGTGCAGTGCACGCCGGACTTGTCGTCGGAGGATTGCGATAAGTGTGTTGGTCAGCGTGTTACGTTGATTAATGAGGCCAGTATTGGGGCGAGGATATTTACGGCGAGTTGTGTTTTGAGATTTGAGAATTATATTTTCTTTACTCCGCCGGCTAATGCCACTCTCTCCCCGTCTCCACTGCCGTCTCCGCCGCAACTTCCGGCGCCAACTGCAGGCTCTGCAGGAAGTAATGGGAAAGGCAAAGGCAATAGCAATATTACTACTGTCATAATCATCGTTGTATCAATTATTTCTGTAATCATTCTCGTTATTGGCATTTGCTTCATTTTACGAGTGAAATGGAGAAAACACAAAAGAGCATCTGAAGTAGAAAGTGTTGGCTTCCAAGAAGAAACTGATACGGAAATTAGTGGCATGGAGACGATTCAATTTGATTTCGACACAATCAAAGTAGCAACAAATGAGTTCTCAGATGAAAATAAGCTAGGAGAAGGTGGATTTGGAGTTGTCTACAAGGGAAGTTTATCCAATGGACAAAACATAGCAGTGAAGAGGCTTTCGAGGAATTCAGGACAAGGAGGTGAGGAGTTCAAAAATGAAGTCCTCGTGATGGCTAAGCTTCAACATAGAAACTTAGTTAGGCTGCTGGGATTTTGCTTCGAGGGAAATGAAAGACTTCTCATCTATGAGTTTCTACCAAACGCCAGCCTTGATCAGTTCATATTTGATCCTGTCAAACGAGCAATTTTGGATTGGGAAAGACGAAACAAAATTATATGTGGCATTGCTCGAGGACTACTCTACCTCCATGAAGATTCTCGTATTCGAATAATTCATCGTGATCTTAAAGCTAGCAATATTTTGTTGGATAGAGAAATGAATCCTAAAATTTCAGATTTTGGCATGGCAAGATTATTTGAATTGGATGAGACTCGAGGTCAAACAAACAGAATCGTGGGAACTTATGGGTACATGGCTCCAGAGTATGCCTACCATGGACAATTTTCAATAAAATCAGATGTGTTTAGCTTTGGTGTATTGATTCTTGAGATTATAAGCGGCCAAAAAAATAACTGTTTTCGTGACAGAGAGAATACGGAGGATCTTTTAAGCTTTGCATGGAAAAATTGGAGGGAAGGAACACCTGAAAATGTGATAGATACAATACTTGGTTCAGGTTGGAGGATGGAAATGATAAGATGTATTCATATCGGATTACTGTGTGTTCAAGAGAATGCAGCAGATCGACCAACAATGGCGTCGGTAGTTCTAATGCTTAATAGCTTCTCTCTCACTCTCTCTGTACCCACTCGACCTGCCTTCTTTCTGCAGAGCAATAACATCTCGTCAAGTGAAAATCATTCCCCAACTGCTCCTCTTCATGCTAATTCACAAAATGGAGCTTCCATTTCTGACATTTATCCTCGCTAG 2013 44.21 MATWKTLLLLHSIFLIHMASPTISQLDFARSLCPDAANYTANSTYRKNLQNLLSSISSEPQLLTFGFHTLSAGEEPDKVNAAVLCRGDLSADICKSCVEDSTHKILQVCPNQKAAIVWYNQCMLRFSDTEILGVMNNLDSQSIFNGRKASDPNKFLEAVRSLMNRLREEAASGNSTRKFATGKVPAGNETVYGLVQCTPDLSSEDCDKCVGQRVTLINEASIGARIFTASCVLRFENYIFFTPPANATLSPSPLPSPPQLPAPTAGSAGSNGKGKGNSNITTVIIIVVSIISVIILVIGICFILRVKWRKHKRASEVESVGFQEETDTEISGMETIQFDFDTIKVATNEFSDENKLGEGGFGVVYKGSLSNGQNIAVKRLSRNSGQGGEEFKNEVLVMAKLQHRNLVRLLGFCFEGNERLLIYEFLPNASLDQFIFDPVKRAILDWERRNKIICGIARGLLYLHEDSRIRIIHRDLKASNILLDREMNPKISDFGMARLFELDETRGQTNRIVGTYGYMAPEYAYHGQFSIKSDVFSFGVLILEIISGQKNNCFRDRENTEDLLSFAWKNWREGTPENVIDTILGSGWRMEMIRCIHIGLLCVQENAADRPTMASVVLMLNSFSLTLSVPTRPAFFLQSNNISSSENHSPTAPLHANSQNGASISDIYPR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52334626 52338957 + Lag0013735.1 Lac1g3243 596814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3243 670 Gene3D Transferase(Phosphotransferase) domain 1 426 629 - -
Lac1g3243 670 MobiDBLite consensus disorder prediction 250 274 - -
Lac1g3243 670 Pfam Protein tyrosine and serine/threonine kinase 353 617 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3243 670 CDD STKc_IRAK 356 621 - -
Lac1g3243 670 Gene3D - 26 130 IPR038408 -
Lac1g3243 670 Gene3D - 138 240 IPR038408 -
Lac1g3243 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3243 670 Gene3D Phosphorylase Kinase; domain 1 324 425 - -
Lac1g3243 670 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524(InterPro)
Lac1g3243 670 ProSiteProfiles Protein kinase domain profile. 350 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3243 670 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 131 - -
Lac1g3243 670 ProSiteProfiles Gnk2-homologous domain profile. 27 131 IPR002902 -
Lac1g3243 670 FunFam Cysteine-rich receptor-like protein kinase 10 309 425 - -
Lac1g3243 670 SUPERFAMILY Protein kinase-like (PK-like) 335 653 IPR011009 -
Lac1g3243 670 FunFam Cysteine-rich receptor-like protein kinase 10 140 240 - -
Lac1g3243 670 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Lac1g3243 670 Pfam Salt stress response/antifungal 148 238 IPR002902 -
Lac1g3243 670 FunFam Cysteine-rich receptor-like protein kinase 28 426 628 - -
Lac1g3243 670 SMART serkin_6 350 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3243 670 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 148 636 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac1g3243 670 MobiDBLite consensus disorder prediction 647 670 - -
Lac1g3243 670 ProSiteProfiles Gnk2-homologous domain profile. 137 240 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3243 Lac-Chr1:52334626 Lac1g3249 Lac-Chr1:52376129 7.30E-265 dispersed
Lac1g3243 Lac-Chr1:52334626 Lac1g3244 Lac-Chr1:52346535 2.20E-31 tandem
Lac1g3243 Lac-Chr1:52334626 Lac10g0731 Lac-Chr10:5680441 5.60E-100 wgd
Lac1g3243 Lac-Chr1:52334626 Lac12g0631 Lac-Chr12:6673623 2.30E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85941 PF07714 PK_Tyr_Ser-Thr 8.30E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3243 - - - 0.0