Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3245 ATGGAGATGGGAACTCCAAAAAACCTTCTCTTCTTCTGCTTCATTCTTATATTCATGGTTCCTACCATCATTTCTCAAATGGAAATCAAGACCCACTCATGTTCAAACAGCGGCAACTACACCAGAAACAGCGTTTACAAGCAAAATCTCGACAGCGTCCTTTCCTCCATCGCATCCAACACCGAGATAGATTATGGGTTTTACAATTTCTCGGCCGGACAGGGACCCGACACGGTGGACGCCATCGCCCTTTGCCTGGGCGATCTGACGGTGGAAAAATGCAGGAGTTGTCTCAGAAATTCGACTCGGAGAATTCTAGAGGATTGTCCCACCCAGAAGGAGGCTATCGGATGGTACACCGATTGTATGATTCGTTACTCAAATGAATCGATATTTGGCATCGGGAACGACCGAGTGCTTGAGCCAGTTTTTATTGCTGGTAAGAATGCATCGGACTTAGCTGGGTACACTCAATCACTAAGCACTCTGTTGCAAAGACTGAGGAATCAGGCTGCGTCTGGGGATTCTAGACACAAATTCGCAGTGGGCGATATTGCAGCACCCAATTTGGATACGATATTTGGGCTTCTTCAGTGTACTCCCGATTTGACATTTGTGGATTGCAATAATTGTCTATTGAAAGCCGCTGGTCGTGTTCCAACTGGAAGTATAGGAACCAGGATATTTTTGACCAGCTGTTATTTGAGATATGAGACTAACGATCTTTTCTACAACGCTCTGTCACCGCCGCCCACTGCTGGTGGCGCTCCTTCCCCACCCCTCTCGCCGCCGCCTCTGCCTCCGATGCAAGAAAATAATGGCAATAATGCTAAAATTGTTATAGTCATTGTGGTGTCCATGGTTTCAGTCATCATTCTTGTTGTTGGAATTTTGATCGTTTTCAGATTGAGGAAGAGAAAGCAGAAAAGACAATTAGTAAAATCTGAAGGTGTTGCTTTTGGGGACACCACTGATGGAATTGGAGTTGGCAGCATAGAGACAATTCAATTTGATTTTGACATAATTAAAGTTGCAACAAATGACTTCTCAAGTGAAAACAAACTTGGACAGGGTGGATTTGGAGCTGTTTACAAGGGTAAGCTACCCAATGGACAACATATTGCAGTAAAGAGGCTTGCGAATAATTCACAACAAGGAGATGTTGAATTCAAGAACGAAGTCCTTTTGGTGATCAAGCTTCAACATCGAAACTTGGTTAGGCTGCTAGGATTCTGCTTGCAAGGAACCGAAAGACTTCTCATATATGAGTTTGTACCAAATGCTAGCCTTGACCAATTCATATTTGACATGGAAAAAAGGACACTATTAGATTGGGAAAGACGGTACAAAATTATAAATGGCATTGCACGAGGACTTCTTTACCTTCATGAAGATTCTCGCCTTCGAATCATACACCGTGATCTCAAAGCGGGTAATATTTTGTTGGATGCTGAAATGAATGCAAAGATTGCAGACTTTGGTATGGCAAGATTATTTGAAGTAGATGAGACTCAAGGAAACACGAGTAGAATTGTGGGAACTTATGGTTATATGGCTCCAGAATATGTCATGCATGGACAATTTTCAGTGAAATCAGACGTTTTTAGTTTTGGCATTTTGGTTCTTGAAATTGTGAGTGGTCGGAAAAATAATTATTTTCGCAATGATGAAAAAGCAGAACATCTCTCAAGCTGTGCATGGAAAAATTGGAAGGCCGGAACTACTACGAATATTATCGATCCAATACTGAGTGTTGGTTCGAAGATTGAAATGATGAGATGCATTCACATTGGACTATTGTGTGTTCAAGAGAATGCAGCAGATCGTCCAACAATGGCTTCGGTGGTTTTGATGCTTACTAGCACCTCTCTCACTCTTCCTATCCCGTATGAACCAGCATTCTTTATGCATAGTCAGATCAATGAATCTAGCACACTGTCAAAGCCACATCATTGGTCGGAAATAACCGAGGTTAGTGATTTTGAAAGTGCATCCCTTCAGCATTCTAAGAATGAAACTTCAGCTAGTGAGCTCCACCCTCGCTAG 2046 42.47 MEMGTPKNLLFFCFILIFMVPTIISQMEIKTHSCSNSGNYTRNSVYKQNLDSVLSSIASNTEIDYGFYNFSAGQGPDTVDAIALCLGDLTVEKCRSCLRNSTRRILEDCPTQKEAIGWYTDCMIRYSNESIFGIGNDRVLEPVFIAGKNASDLAGYTQSLSTLLQRLRNQAASGDSRHKFAVGDIAAPNLDTIFGLLQCTPDLTFVDCNNCLLKAAGRVPTGSIGTRIFLTSCYLRYETNDLFYNALSPPPTAGGAPSPPLSPPPLPPMQENNGNNAKIVIVIVVSMVSVIILVVGILIVFRLRKRKQKRQLVKSEGVAFGDTTDGIGVGSIETIQFDFDIIKVATNDFSSENKLGQGGFGAVYKGKLPNGQHIAVKRLANNSQQGDVEFKNEVLLVIKLQHRNLVRLLGFCLQGTERLLIYEFVPNASLDQFIFDMEKRTLLDWERRYKIINGIARGLLYLHEDSRLRIIHRDLKAGNILLDAEMNAKIADFGMARLFEVDETQGNTSRIVGTYGYMAPEYVMHGQFSVKSDVFSFGILVLEIVSGRKNNYFRNDEKAEHLSSCAWKNWKAGTTTNIIDPILSVGSKIEMMRCIHIGLLCVQENAADRPTMASVVLMLTSTSLTLPIPYEPAFFMHSQINESSTLSKPHHWSEITEVSDFESASLQHSKNETSASELHPR 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52348334 52351173 + Lag0013737.1 Lac1g3245 596816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3245 681 ProSiteProfiles Protein kinase domain profile. 349 634 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3245 681 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Lac1g3245 681 Pfam Salt stress response/antifungal 151 239 IPR002902 -
Lac1g3245 681 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524(InterPro)
Lac1g3245 681 FunFam Cysteine-rich receptor-like protein kinase 28 425 627 - -
Lac1g3245 681 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 131 - -
Lac1g3245 681 MobiDBLite consensus disorder prediction 252 270 - -
Lac1g3245 681 Gene3D - 26 130 IPR038408 -
Lac1g3245 681 Gene3D - 142 241 IPR038408 -
Lac1g3245 681 SMART serkin_6 349 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3245 681 SUPERFAMILY Protein kinase-like (PK-like) 334 647 IPR011009 -
Lac1g3245 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3245 681 MobiDBLite consensus disorder prediction 251 270 - -
Lac1g3245 681 FunFam Cysteine-rich receptor-like protein kinase 10 304 424 - -
Lac1g3245 681 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 161 635 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac1g3245 681 Gene3D Phosphorylase Kinase; domain 1 323 424 - -
Lac1g3245 681 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Lac1g3245 681 Gene3D Transferase(Phosphotransferase) domain 1 425 625 - -
Lac1g3245 681 Pfam Protein tyrosine and serine/threonine kinase 352 615 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3245 681 CDD STKc_IRAK 355 620 - -
Lac1g3245 681 ProSiteProfiles Gnk2-homologous domain profile. 138 242 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0746 Lac-Chr10:5781596 Lac1g3245 Lac-Chr1:52348334 4.90E-152 dispersed
Lac10g0753 Lac-Chr10:5813722 Lac1g3245 Lac-Chr1:52348334 2.30E-170 dispersed
Lac1g3245 Lac-Chr1:52348334 Lac1g3250 Lac-Chr1:52387072 1.70E-216 dispersed
Lac1g3244 Lac-Chr1:52346535 Lac1g3245 Lac-Chr1:52348334 8.20E-26 tandem
Lac1g3245 Lac-Chr1:52348334 Lac1g3246 Lac-Chr1:52355551 2.10E-299 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85942 PF07714 PK_Tyr_Ser-Thr 4.40E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3245 - - - 0.0