Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3247 ATGGAGATGGCTACTCGGAGTTTCACAACGCTTCTCTTCCTCTCCTTGGAGGTTATTGCACAATTGATGTTTACCACAACTTCTCAGCCAGATTTCTTTCACTCCAAATGTTCAGACAAAGGCAACTACACCAACGACAGCCCTTTCAAGAAAAATCTCGACAACGTACTTCGCTCCATCTCCTCCGACTCCAACGCCGACACTCGGGTCGACTACGGTTTCTACAACGCCACCTCCGGTGAAGATCCCGACCGAGCCAACGCCAAGGCTCTTTGTCGTAAAGGCGTTCCCTTGGAAGAATGCAGAAGTTGTGTGAATGACTCAGTGAGCAGGATTATACAAAACTGCCCAAACCAGAAGGAAGCGACGGGATGGTACCACGATTGCCAAATTCTTTACTCAAACAATTCTGTTCACGGTGAGATAGACATGTCCGTGCTACTAGGGCCACACAACAGCGGTAGAGCCCCAGACGCGAACGGTTTCGACGAGGAACTGAGGGGGCTGCTGGATCGACTTCGAAACGAGGCCGCGTCAGGGAGTTCTATTCGGAAGTCGGCGGGTGGAGATGTGAAGCTTACGAGTCCGAATACGTATAGGGTGTATGGGCTCGTGGATTGTTTTCCCGACATGTCGTTCATGGATTGTGATGTGTGCCTGAGTCGGCTTCAAAGAAATAATGGCAATACGGCTAGAACTGTTATTATCGTTGTGGTGTCCGTCGTTTCTGCCATAGTTCTCGTTGTTGGTTTTTTCAGCATTTTGAGATTGAAGAAGCGAAAACACAAAAGATTATTAGAAAATTTTGAAGGTGTACTTGGAGACACTGATGCAATTAGCAGTGTGGAGACGATTCAATTTGATTTTGAATCCATTAAAGTTGCAACAAGTGACTTCTCAAATGAAAACAAGCTTGGACAGGGTGGATTTGGAGCTGTTTACAGGGGTAAGCTACCTAATGGACAACATATAGCAGTGAAGAGGCTTGCACATAATTCACAACAAGGAGACATTGAATTCAAAAATGAAGTCCTTTTGGTGGTCAAGCTTCAACACCGAAACTTGGTTAGGCTATTGGGATTCTGCTTGCAAGGACGCGAAAGACTTCTCATATATGAGTTTGTACCTAATGGTAGCCTTGACCACTCCATATTTGATTTTGAGAAGCGAACACTAATAGATTGGCCCAGACGATACAAAATCATAAATGGTATTGCACGTGGACTTCTTTACCTTCATGAAGATTCCCGCCTTCGAATCATACATCGTGATCTCAAAGCTAGCAATATTTTGTTGGACGAAGAAATGAGTCCAAAGATTGCAGATTTTGGTATGGCAAGATTATTTGAAGTAGATGAGACTCAAGGCAATACAAGTAGAATTGTGGGAACTTATGGTTATATGGCTCCAGAGTACGTAATGCACGGACAATTTTCGATAAAATCAGATGTTTTTAGTTTTGGTGTTTTAGTTCTTGAAATTGTGAGTGGCCAAAAAAATAACTGTTTTCGCAGCGGAGATAAAGTAGAAGATCTCTCCAACTTTGCATGGAGAAATTGGAAGGCAGGAACAACTACAAATGTTATAGATTCAACACTTAGTGTTGGTTCTAGGATTGAAATGATAAGATGCATTCACATTGGACTATTGTGTGTTCAAGACAATGCAGCAAATAGGCCAACAATGGCTTCAGTAGTATTGATGCTCAGTAGTTTCTCTCTAAATCTCCCACTACCTTCTGAACCTGCATTCTTCATGGACATAGTTGAGAACTTGCCTCCAGTGGGAGGACGCATGATTAATACGGAACAAGTGGATAACTATAAGTCTCAGCCGGCAGCCGCTTTGGGGGCTTCTTCCTTTTTAAGTTCCAAAAACCGATTGGATTTTACAGAAGCCGCCAAATGGAAATGGGCAGCTGGAGTTTGA 1929 43.49 MEMATRSFTTLLFLSLEVIAQLMFTTTSQPDFFHSKCSDKGNYTNDSPFKKNLDNVLRSISSDSNADTRVDYGFYNATSGEDPDRANAKALCRKGVPLEECRSCVNDSVSRIIQNCPNQKEATGWYHDCQILYSNNSVHGEIDMSVLLGPHNSGRAPDANGFDEELRGLLDRLRNEAASGSSIRKSAGGDVKLTSPNTYRVYGLVDCFPDMSFMDCDVCLSRLQRNNGNTARTVIIVVVSVVSAIVLVVGFFSILRLKKRKHKRLLENFEGVLGDTDAISSVETIQFDFESIKVATSDFSNENKLGQGGFGAVYRGKLPNGQHIAVKRLAHNSQQGDIEFKNEVLLVVKLQHRNLVRLLGFCLQGRERLLIYEFVPNGSLDHSIFDFEKRTLIDWPRRYKIINGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMSPKIADFGMARLFEVDETQGNTSRIVGTYGYMAPEYVMHGQFSIKSDVFSFGVLVLEIVSGQKNNCFRSGDKVEDLSNFAWRNWKAGTTTNVIDSTLSVGSRIEMIRCIHIGLLCVQDNAANRPTMASVVLMLSSFSLNLPLPSEPAFFMDIVENLPPVGGRMINTEQVDNYKSQPAAALGASSFLSSKNRLDFTEAAKWKWAAGV 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52361342 52366039 + Lag0013739.1 Lac1g3247 596818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3247 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3247 642 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524(InterPro)
Lac1g3247 642 Gene3D Transferase(Phosphotransferase) domain 1 375 576 - -
Lac1g3247 642 Pfam Protein tyrosine and serine/threonine kinase 302 566 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3247 642 FunFam Cysteine-rich receptor-like protein kinase 28 375 577 - -
Lac1g3247 642 Pfam Salt stress response/antifungal 36 135 IPR002902 -
Lac1g3247 642 SUPERFAMILY Protein kinase-like (PK-like) 287 586 IPR011009 -
Lac1g3247 642 ProSiteProfiles Gnk2-homologous domain profile. 144 254 IPR002902 -
Lac1g3247 642 Gene3D Phosphorylase Kinase; domain 1 270 374 - -
Lac1g3247 642 ProSiteProfiles Protein kinase domain profile. 299 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3247 642 ProSiteProfiles Gnk2-homologous domain profile. 31 138 IPR002902 -
Lac1g3247 642 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 88 585 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac1g3247 642 Gene3D - 30 137 IPR038408 -
Lac1g3247 642 Gene3D - 145 235 IPR038408 -
Lac1g3247 642 FunFam Cysteine-rich receptor-like protein kinase 10 259 374 - -
Lac1g3247 642 CDD STKc_IRAK 305 569 - -
Lac1g3247 642 SMART serkin_6 299 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3247 Lac-Chr1:52361342 Lac1g3250 Lac-Chr1:52387072 2.20E-263 dispersed
Lac1g3246 Lac-Chr1:52355551 Lac1g3247 Lac-Chr1:52361342 1.10E-207 tandem
Lac1g3247 Lac-Chr1:52361342 Lac1g3248 Lac-Chr1:52371049 3.40E-195 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85944 PF07714 PK_Tyr_Ser-Thr 5.90E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3247 - - - 0.0