Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3251 ATGTTCTGTTTCTTCAATTACAGAGCTTCCCCATTTTCGTTGCTATTTCTGATCTCAATCTTTGGGTTCAGCCACTCCCATCATTTCGAACCAGCCTATAGGTTCCACATCTGTTCAGCGTCAAGCGATAACACAACCAACTCTAATCTGGGTTCAGACCTCATTGGCCTACTGACTTCCCTATCCCAAGCTTCCTCTGACAGCTTCTACAACAGAACCTTCAATGGAATGTATGGCCTTGTCCTCTGTCGAGGAGATGTTCCCAGTGATAACTGTCACAGTTGTGTTAGTGCCGCAAGCAAAGATGTAAGGGATCGATGCCCTTCAAGAGTAAACGCCACAATATGGTACGATGAGTGCATGCTGAGATACTCAGACAATAACTTCTTGGGGACTGTAGAGATGTCGCCGAGAATTCTCATGGGCGATTCTGGGAATCAGACATCTCCCGACGATCGGAATATCGATGGGCCTGCTCTGTTATCTCAGATGGCGAGTGAAGCCGCAGGCTCAGAGATGATGTTCAAGGCAAACAAGTTGGATGAGCGTGGGACACGCTATGGATTGGTTCAGTGCACAAGGGATCTCAACAGTAGCGAGTGTAGTACATGTTTGACGGCTCTGTTGGAGGAGATCGGGCAGTTTGGTAAAGAGAGAGTGGGGTGGAGAATTTTGGGCCTGAGTTGTAACATAAGGTACGAGCAATATCGTTTCTATCAGCAATCAGCTTCGTCTCAAGGATTGAACGCGAAAATGATTGTAGTAATCACTATATCAACCGTTGCAGCAGTAGCATTTCTTTCAAGTCTATTGTATTGTTTACTTTTGTCAAAGAAGAGAAGACAGGAGATGGACACAGGTGAACAAGTTCTGTTACGAAATTTGGGAGATGCGAAGTCTGCAGAACTGATGAAGCAAGATTTGCATTCAAGAGGTGGAGACAGTGATGAAGAAATGCATTACTTCAGTTTCATCACCCTCCAGGCTGCCACAAACAACTTTGCAGATGCAAATCGACTTGGAGAAGGCGGTTTTGGTCCGGTTTTCAAGGGAAAGTTGGTGAATGGAGAAGAAATAGCTGTAAAAAGACTGTCAGTAAAGTCGAGTCAAGGTCATGATGAGTTCAAGAACGAAGTCATGGTCATAATGAAGCTTCAACACAAAAATCTGGTCAGGCTTTTGGGATGCTGTTTGGAGGGAGAGGAAAAACTTCTTGTCTATGAGTACATGGCAAACACTAGTCTAGATGCCTTCTTATTTGATCCAGTTAAATGCAAACAACTTGACTGGCTTAAGCGCAACAACATCATCAACGGAGTGGCAAGAGGAATTCTATATCTACATGAAGACTCTCGGCTCAAAATCATTCATAGGGATTTGAAAGCTAGCAATGTGCTGTTGGATTATGAGATGAATGCAAAGATATCGGACTTCGGAACTGCCAGAATTTTCGGAGGCAAACAAGTTGAGGCTAGCACGAACAGAGTTGTTGGCACTTTTGGATATATGGCACCAGAATATGCAATGGAGGGAGTGTTTTCAATAAAGTCTGACGTTTACAGTTTTGGGATTTTAATGTTAGAAGTGATAAGCGGGAGAAAGAACAGCGGTTTCTTCAAAGTAGACAATGCACAAAGCCTTCTATCTCAGGCATGGCAACTATGGAAGGAAGGCAGAGAAGAGGAAATGGTTGATCCAAACCTGGTTGGAGATTGTTCTTTGAGCGAAGCTCTGAGATGGATCCAAATTGGTCTGCTGTGCGTACAAGAAGACCCTAACATCAGACCCACCATGTCAATGGTTGTTCTAATGCTTGGAAGCAAATCAATTCGCCTTCCTCAACCGTCAAAACCTCCATTTTTTCCGATTGGGTTTCCGATGTCGGCCGATCAATCTTCAACGACTTTCCTGGGAACGGGATATCTCTCCACTCAATCGTCTACCACTGCTTCCAGTTCCATCTAG 1965 44.33 MFCFFNYRASPFSLLFLISIFGFSHSHHFEPAYRFHICSASSDNTTNSNLGSDLIGLLTSLSQASSDSFYNRTFNGMYGLVLCRGDVPSDNCHSCVSAASKDVRDRCPSRVNATIWYDECMLRYSDNNFLGTVEMSPRILMGDSGNQTSPDDRNIDGPALLSQMASEAAGSEMMFKANKLDERGTRYGLVQCTRDLNSSECSTCLTALLEEIGQFGKERVGWRILGLSCNIRYEQYRFYQQSASSQGLNAKMIVVITISTVAAVAFLSSLLYCLLLSKKRRQEMDTGEQVLLRNLGDAKSAELMKQDLHSRGGDSDEEMHYFSFITLQAATNNFADANRLGEGGFGPVFKGKLVNGEEIAVKRLSVKSSQGHDEFKNEVMVIMKLQHKNLVRLLGCCLEGEEKLLVYEYMANTSLDAFLFDPVKCKQLDWLKRNNIINGVARGILYLHEDSRLKIIHRDLKASNVLLDYEMNAKISDFGTARIFGGKQVEASTNRVVGTFGYMAPEYAMEGVFSIKSDVYSFGILMLEVISGRKNSGFFKVDNAQSLLSQAWQLWKEGREEEMVDPNLVGDCSLSEALRWIQIGLLCVQEDPNIRPTMSMVVLMLGSKSIRLPQPSKPPFFPIGFPMSADQSSTTFLGTGYLSTQSSTTASSSI 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52406725 52409844 - Lag0013743.1 Lac1g3251 596822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3251 654 ProSiteProfiles Gnk2-homologous domain profile. 32 129 IPR002902 -
Lac1g3251 654 CDD STKc_IRAK 340 605 - -
Lac1g3251 654 FunFam Uncharacterized protein 410 611 - -
Lac1g3251 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3251 654 SMART serkin_6 334 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3251 654 Gene3D Transferase(Phosphotransferase) domain 1 410 612 - -
Lac1g3251 654 Pfam Protein tyrosine and serine/threonine kinase 338 602 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3251 654 Gene3D - 140 238 IPR038408 -
Lac1g3251 654 Gene3D - 32 129 IPR038408 -
Lac1g3251 654 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 298 409 - -
Lac1g3251 654 SUPERFAMILY Protein kinase-like (PK-like) 315 634 IPR011009 -
Lac1g3251 654 Gene3D Phosphorylase Kinase; domain 1 308 409 - -
Lac1g3251 654 ProSiteProfiles Gnk2-homologous domain profile. 135 238 IPR002902 -
Lac1g3251 654 ProSiteProfiles Protein kinase domain profile. 334 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3251 654 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 136 621 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac1g3251 654 Pfam Salt stress response/antifungal 38 126 IPR002902 -
Lac1g3251 654 Pfam Salt stress response/antifungal 159 236 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1448 Lac-Chr12:25993296 Lac1g3251 Lac-Chr1:52406725 8.10E-37 dispersed
Lac1g3251 Lac-Chr1:52406725 Lac1g3254 Lac-Chr1:52428620 3.00E-215 dispersed
Lac1g3250 Lac-Chr1:52387072 Lac1g3251 Lac-Chr1:52406725 8.80E-120 tandem
Lac1g3251 Lac-Chr1:52406725 Lac1g3252 Lac-Chr1:52414347 3.20E-209 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85948 PF07714 PK_Tyr_Ser-Thr 1.20E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3251 - - - 0.0