Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3252 ATGAGGACACCTTCTTCTTTGCCTTTATCTTTACTACTGCTGATTTTAATCTTTGGGTTCATAATCCCTTCTCGTTGCCAACCTTCCTACTGCTCAAACACGACCTACTCCCATCTGGATTCTAACGTCAATTTCCTACTGGATTCCTTGTCGTCTAAAGCTTCAAACCGCACTTTCTACAACGACAGCTCTAATGGAACCTATGGCCTCTTCCTCTGCCGAGGGGATGTTTCTAATGACGAGTGTCATAGCTGCGTCAAGGATGCACGTGAAGGAATCAAACAGCGCTGCCCTTCGAGAACAAATGCCATCATATGGTTTGACAAATGCATGTTGAGATACTCTGTTAAAAACTTCTTTGGGACCGTGGATATGTCTCAGAGAGTGCTAATGTGGAATACTCAGAATGAAACTTCTCCCGACGATCCTGTTACCGATGCTCTTGCTCTTCTGTATGACATAATAGCAAAAGCTGTGAAGGAAGATTCGATGTTCAAGGCAGATATGCGGAATCCAGGCAATCCTAGATATGCATTGGCACAGTGTTCAAGAGATATCCTCAAGCTTGACTGTGAAAAGTTTTTGGACAATTTGTTGAACTACGGGAAGGATTGTTGCATTCGACAGAAAGGGTGGCGAATTCTAGCCCCAAATTGTAATTTACGACTTGATGACTACCTTTTCTATCAGATACCAGAAGCTCCCCCTCCATCCTTGCCAGCGGCTCCTCCCCCTGATGAAGGAGGGAACAAAACAAGGATCATTGTCATCAGCATATCAACACTTGCTGCAGCCGCAATTCTGCTAGGCCTATTATATTGTTTATTTTTCTGGAGAAACAAAAGACAGGAGAGGGATAGAAGTGAAGAGCTTCCTTTGCGAAATCCAAGCGTTCGAGAATCAGTTCACTTGATAAGGCAACATTTCAATGCAACAAACCAGGAGGGTGATGAGGATATGCACTACTTCAGTTTGAATACTCTAAAGACCGCTACAGACAACTTTTCAGATGTTAATAGACTTGGAGAAGGCGGGTTTGGTCCCGTTTACAAGGGAAAGCTGATGGATGGTGAAGAAATAGCTGTGAAAAGACTATCAACAAAATCAAGTCAAGGACATGAAGAGTTTAAAAACGAAGCAAAAGTCATCTTGAAACTTCAACATAAGAATCTGGTCAGGCTCTTGGGATGTTGTGTTGAAGAAGAAGAACAACTTCTAGTCTATGAGTACCTAGCAAATACTAATCTTGATGTTTTCTTGTTTGATCCAATGAAGTGCAAACAACTTGACTGGCTCAAGCGTGAAAACATTGTCAATGGGATTGCCAGAGGAATTCTCTACCTCCATGAAGATTCTCGACTCAAAATCATCCACAGAGATTTGAAAGCAAGTAATGTACTTTTAGATGAGGAGATGAATCCAAAAATATCAGACTTTGGAACTGCTAGAATATTTGGAGGCAAGAAAATTGATGCTAGCACCAATAGAATAGTGGGAACATATGGTTATATGGCACCAGAATATGCTATGGAGGGACTATTCTCAGTTAAGTCGGATGTATACAGTTTTGGAGTTCTTATCCTAGAAGTGATCAGTGGGAGAAAGAACATTGGTTTTCTGAACATGGACAGAGCACAGAACCTTCTGTCATATGCATGGGAGCTATGGAGCGAAGGTAGAGCAAAAGAAATGGTGGACATGAACTTGGCTGGAGATTTCCCTGTGAGTGAGGCTGTAAAATGGATTCACATTGGGTTGTTGTGTGTGCAAGAAGATCCAAACATGAGACCCACCGTGTCAGTGGTTGTTCTAATGCTTGGAAGCCAGTCGATTAACCTTCCTCAGCCATCAAAACCTCCATTTCTTTCAGGTGGAGGGGCTCTCATTTCATATCAATATTCAACCACGGAAACGGGCTCAAAGTTACACACCACAGATCGGTCGTCTACTAGTACTTCAATCTAG 1965 42.34 MRTPSSLPLSLLLLILIFGFIIPSRCQPSYCSNTTYSHLDSNVNFLLDSLSSKASNRTFYNDSSNGTYGLFLCRGDVSNDECHSCVKDAREGIKQRCPSRTNAIIWFDKCMLRYSVKNFFGTVDMSQRVLMWNTQNETSPDDPVTDALALLYDIIAKAVKEDSMFKADMRNPGNPRYALAQCSRDILKLDCEKFLDNLLNYGKDCCIRQKGWRILAPNCNLRLDDYLFYQIPEAPPPSLPAAPPPDEGGNKTRIIVISISTLAAAAILLGLLYCLFFWRNKRQERDRSEELPLRNPSVRESVHLIRQHFNATNQEGDEDMHYFSLNTLKTATDNFSDVNRLGEGGFGPVYKGKLMDGEEIAVKRLSTKSSQGHEEFKNEAKVILKLQHKNLVRLLGCCVEEEEQLLVYEYLANTNLDVFLFDPMKCKQLDWLKRENIVNGIARGILYLHEDSRLKIIHRDLKASNVLLDEEMNPKISDFGTARIFGGKKIDASTNRIVGTYGYMAPEYAMEGLFSVKSDVYSFGVLILEVISGRKNIGFLNMDRAQNLLSYAWELWSEGRAKEMVDMNLAGDFPVSEAVKWIHIGLLCVQEDPNMRPTVSVVVLMLGSQSINLPQPSKPPFLSGGGALISYQYSTTETGSKLHTTDRSSTSTSI 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52414347 52417105 - Lag0013744.1 Lac1g3252 596823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3252 654 Gene3D Phosphorylase Kinase; domain 1 308 410 - -
Lac1g3252 654 ProSiteProfiles Protein kinase domain profile. 335 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3252 654 Gene3D Transferase(Phosphotransferase) domain 1 411 614 - -
Lac1g3252 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3252 654 ProSiteProfiles Gnk2-homologous domain profile. 125 228 IPR002902 -
Lac1g3252 654 CDD STKc_IRAK 341 606 - -
Lac1g3252 654 Pfam Protein tyrosine and serine/threonine kinase 339 603 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3252 654 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 106 621 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac1g3252 654 SUPERFAMILY Protein kinase-like (PK-like) 318 623 IPR011009 -
Lac1g3252 654 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 299 410 - -
Lac1g3252 654 ProSiteProfiles Gnk2-homologous domain profile. 21 119 IPR002902 -
Lac1g3252 654 FunFam Uncharacterized protein 411 612 - -
Lac1g3252 654 Gene3D - 125 228 IPR038408 -
Lac1g3252 654 Gene3D - 23 119 IPR038408 -
Lac1g3252 654 SMART serkin_6 335 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3252 654 Pfam Salt stress response/antifungal 31 116 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3252 Lac-Chr1:52414347 Lac1g3254 Lac-Chr1:52428620 1.40E-257 dispersed
Lac1g3251 Lac-Chr1:52406725 Lac1g3252 Lac-Chr1:52414347 3.20E-209 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85949 PF07714 PK_Tyr_Ser-Thr 8.70E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3252 - - - 0.0