Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3254 ATGATTCATTTCCTCCCAGCTCAAACACCTTCTTCTTTGTCTCTAACTTTCCTGCTACTCATTTCAATCTCTGGACTCATGGTTCCTTCTTGTAGCCAACGTGATTTAAAATGCTCCAACACCACTAACCCCAATCTGAATTCCGACATTAATTTCCTTTTGAATTCCTTGACCTCTAAAGCTTCCACCCACACTTTCTACAATGAGACCTTTAATGGAATCCATGGCCTCTTCCTCTGCCGAGGGGATCTTCCTAACGAGGCCTGTCATAGCTGCATCGAAGGTGCAACTCAACAAATCAAAGTCGCCTGCTCGTCGCGAACAAATGGCACCATAAGCTTTGATGAATGCGTGTTGAGATACTCAGTTGAGAACTTCTTTGGGATCCTGGAGACAGTTCCAAAAGTAGTGTTATATGATAGTCTGAACCAAACTTCTTTTGAAGACCGTGATTACATCGATCTTGCATTGGTGTCTAATTTAGTAACAGATGCTGCAAATGCAGAGTTGATGTTCAAGGAAGGTGAGGTGAATGTGGCGGGGTTGGATCAGAGATTTGGATTGGCACAGTGTACAAGAGATATCGTCAAGCGTGATTGTGAGGTCTGTTTGACAAATTTGGTGGGTTTTGCAAAAGGGTGTTGCCTAAGGCAGAAACGGTGGCGAGTTTTGGCCCCCAGTTGTAATTTAAGAGTTGAGGAGTTTCGTTTTTATGGGATACCAGGAACTCCATCGTCCTTGCCTCTTGATGAAGAAGGAGGGAACAGAACAAGGACCATAGTCATCAGCATATCAACAGTTGCAGCAGCGGCAATTCTGCTAGGCCTATTGTATGGTTTATTTTTAAGGAGGAACAAAAGACAGGAGAGGGATAGAAGTGACGAGCTTCCTTTGCGAAATCAGGCAAATCGACAGCCGGTTTACTCAATGAGGCAACTTTTGGATGCAACAAATCAAGACAGTGATGGAGATATGAATTACTTCAGTTTCAGTACTCTAAAGGTTATTACAGATGACTTTTCAGATGCTAATAAACTTGGAGAAGGCGGGTTTGGTCCTGTTTACAAGGGAAAGTTGATGGATGGAGAAGAAGTAGCAGTGAAGAGACTATCAACAAAATCGAGTCAAGGACATGAAGAGTTCAAGAATGAAGCAAAGGTCATCTGGAAGCTTCAACATAAGAACTTGGTTAGACTTTTAGGATGTTGCGTTGAAGGAGAAGAAAAACTTCTAGTCTATGAGTACATGGCAAATACCAGTCTTGATGCTTTCTTGTTTGATCCACTAAAGTGCAAACAACTTGACTGGCTCAAGCGCGAAAACATTGTTAGTGGGATTGCAAGAGGAATTCTCTACCTCCATGAAGATTCTCGACTCAAAATCATCCATAGGGATTTAAAAGCGAGCAATGTACTATTAGATGAGGAGATGAATCCAAAAATATCAGATTTTGGAACTGCTAGGATATTTGGAGGCAAACAAATTGATGCCAGCACCAATAGAATAGTTGGAACATATGGTTATATGGCGCCAGAGTATGCTATGGAGGGAGTATTCTCAGTTAAGACCGATGTATACAGTTTCGGAGTTCTTATCCTGGAAGTGATCAGTGGGAGAAAGAACATTGGTTTTCTGAACATGGACAGAGCACATAACCTTTTGTCATATGCATGGGAGCTGTGGAGTGAGGGTATAGTAGAAGAAATGGTGGACAATAGCTTGGCTGGAGATTGCCCTGTGAGTGAGGCTGTAAAATGGATTCACATTGGGTTGTTGTGTGTGCAAGAAGATCCAAACATGAGACCCACCATGTCAGTGGTTGTTCTAATGCTTGGAAGCCAGTCGATCAACCTTCCTCAACCATCAAAACCTCCATTTCTTACAGGTCGAGGATCTCTCACTAGAAATCAATATTCAACCACTGGAACAGGGACAGGGTTACACACCACAGATCAGTCGTCCACCAGTTCTTCTATCTAG 1980 42.63 MIHFLPAQTPSSLSLTFLLLISISGLMVPSCSQRDLKCSNTTNPNLNSDINFLLNSLTSKASTHTFYNETFNGIHGLFLCRGDLPNEACHSCIEGATQQIKVACSSRTNGTISFDECVLRYSVENFFGILETVPKVVLYDSLNQTSFEDRDYIDLALVSNLVTDAANAELMFKEGEVNVAGLDQRFGLAQCTRDIVKRDCEVCLTNLVGFAKGCCLRQKRWRVLAPSCNLRVEEFRFYGIPGTPSSLPLDEEGGNRTRTIVISISTVAAAAILLGLLYGLFLRRNKRQERDRSDELPLRNQANRQPVYSMRQLLDATNQDSDGDMNYFSFSTLKVITDDFSDANKLGEGGFGPVYKGKLMDGEEVAVKRLSTKSSQGHEEFKNEAKVIWKLQHKNLVRLLGCCVEGEEKLLVYEYMANTSLDAFLFDPLKCKQLDWLKRENIVSGIARGILYLHEDSRLKIIHRDLKASNVLLDEEMNPKISDFGTARIFGGKQIDASTNRIVGTYGYMAPEYAMEGVFSVKTDVYSFGVLILEVISGRKNIGFLNMDRAHNLLSYAWELWSEGIVEEMVDNSLAGDCPVSEAVKWIHIGLLCVQEDPNMRPTMSVVVLMLGSQSINLPQPSKPPFLTGRGSLTRNQYSTTGTGTGLHTTDQSSTSSSI 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52428620 52431371 - Lag0013746.1 Lac1g3254 596825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3254 659 ProSiteProfiles Protein kinase domain profile. 340 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3254 659 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 143 626 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac1g3254 659 Gene3D - 26 126 IPR038408 -
Lac1g3254 659 Gene3D - 137 237 IPR038408 -
Lac1g3254 659 Gene3D Phosphorylase Kinase; domain 1 313 415 - -
Lac1g3254 659 Pfam Protein tyrosine and serine/threonine kinase 344 608 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3254 659 SUPERFAMILY Protein kinase-like (PK-like) 322 635 IPR011009 -
Lac1g3254 659 MobiDBLite consensus disorder prediction 620 659 - -
Lac1g3254 659 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 288 415 - -
Lac1g3254 659 SMART serkin_6 340 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3254 659 FunFam Uncharacterized protein 416 617 - -
Lac1g3254 659 Gene3D Transferase(Phosphotransferase) domain 1 416 619 - -
Lac1g3254 659 ProSiteProfiles Gnk2-homologous domain profile. 132 237 IPR002902 -
Lac1g3254 659 Pfam Salt stress response/antifungal 157 233 IPR002902 -
Lac1g3254 659 Pfam Salt stress response/antifungal 38 122 IPR002902 -
Lac1g3254 659 ProSiteProfiles Gnk2-homologous domain profile. 27 126 IPR002902 -
Lac1g3254 659 CDD STKc_IRAK 346 611 - -
Lac1g3254 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3251 Lac-Chr1:52406725 Lac1g3254 Lac-Chr1:52428620 3.00E-215 dispersed
Lac1g3252 Lac-Chr1:52414347 Lac1g3254 Lac-Chr1:52428620 1.40E-257 dispersed
Lac1g3254 Lac-Chr1:52428620 Lac1g3256 Lac-Chr1:52442512 2.30E-122 dispersed
Lac1g3254 Lac-Chr1:52428620 Lac1g3255 Lac-Chr1:52438580 2.20E-128 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85950 PF07714 PK_Tyr_Ser-Thr 1.70E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3254 - - - 0.0