Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g3263 | ATGGCGGATAAAGGCAGAGATGGCGGCCACGCCAGTTTACTCGACGGGAAGTACGAATTAGGCCGCCTTCTAGGGCATGGGACCTTCGCCAAGGTCTACCATGCGCGGAATCTGCGAACGGGGAAGAGCGTCGCGATGAAAGTGGTTGGGAAGGAGAAGATCATCAAAGTCGGTATGATGGAGCAAATCAAGAGAGAAATCTCTGTTATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTTCACGAGGTGGTGGCGAGTAAATCGAAGATCTATTTCGCGATGGAGCTTTTGATATCTGCAATCGATTTCTGCCATAGCCGTGGAGTTTACCACCGCGATCTGAAACCGAAGAATCTCCTCCTCGACGAAGACGGCAAACTTAAGGTCACCGATTTCGGCCTCACCGCCTTCTCCGAGCACTTGAAGCAAGACGGATTGCTGCACACAACTTGTGGAAGAAGAAAGAAGAAAGAAGAAAATAAACAAAATTCAGTCGCCGGCGGCCGGCGGCGGCGGTGTGTGGTGGCCGCCGGTCGTTAG | 543 | 51.75 | MADKGRDGGHASLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMMEQIKREISVMKMVKHPNIVELHEVVASKSKIYFAMELLISAIDFCHSRGVYHRDLKPKNLLLDEDGKLKVTDFGLTAFSEHLKQDGLLHTTCGRRKKKEENKQNSVAGGRRRRCVVAAGR | 180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 52479790 | 52480410 | - | Lag0013755.1 | Lac1g3263 | 596834 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g3263 | 180 | ProSiteProfiles | Protein kinase domain profile. | 18 | 180 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac1g3263 | 180 | SMART | serkin_6 | 18 | 167 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac1g3263 | 180 | FunFam | Non-specific serine/threonine protein kinase | 10 | 97 | - | - | |
Lac1g3263 | 180 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 97 | - | - | |
Lac1g3263 | 180 | ProSitePatterns | Protein kinases ATP-binding region signature. | 24 | 51 | IPR017441 | GO:0005524(InterPro) | |
Lac1g3263 | 180 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 110 | 122 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac1g3263 | 180 | Pfam | Protein kinase domain | 99 | 153 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac1g3263 | 180 | Pfam | Protein kinase domain | 18 | 97 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac1g3263 | 180 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 98 | 154 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Lac1g3263 | 180 | Gene3D | Transferase(Phosphotransferase) domain 1 | 98 | 156 | - | - | |
Lac1g3263 | 180 | SUPERFAMILY | Protein kinase-like (PK-like) | 15 | 153 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g3263 | Lac-Chr1:52479790 | Lac6g2847 | Lac-Chr6:46079680 | 6.80E-77 | dispersed | |
Lac1g3263 | Lac-Chr1:52479790 | Lac3g0204 | Lac-Chr3:1447243 | 2.00E-60 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85953 | PF00069 | Pkinase | 9.60E-18 | CL0016 | Lac | PK |
Pathway information
