Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3263 ATGGCGGATAAAGGCAGAGATGGCGGCCACGCCAGTTTACTCGACGGGAAGTACGAATTAGGCCGCCTTCTAGGGCATGGGACCTTCGCCAAGGTCTACCATGCGCGGAATCTGCGAACGGGGAAGAGCGTCGCGATGAAAGTGGTTGGGAAGGAGAAGATCATCAAAGTCGGTATGATGGAGCAAATCAAGAGAGAAATCTCTGTTATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTTCACGAGGTGGTGGCGAGTAAATCGAAGATCTATTTCGCGATGGAGCTTTTGATATCTGCAATCGATTTCTGCCATAGCCGTGGAGTTTACCACCGCGATCTGAAACCGAAGAATCTCCTCCTCGACGAAGACGGCAAACTTAAGGTCACCGATTTCGGCCTCACCGCCTTCTCCGAGCACTTGAAGCAAGACGGATTGCTGCACACAACTTGTGGAAGAAGAAAGAAGAAAGAAGAAAATAAACAAAATTCAGTCGCCGGCGGCCGGCGGCGGCGGTGTGTGGTGGCCGCCGGTCGTTAG 543 51.75 MADKGRDGGHASLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMMEQIKREISVMKMVKHPNIVELHEVVASKSKIYFAMELLISAIDFCHSRGVYHRDLKPKNLLLDEDGKLKVTDFGLTAFSEHLKQDGLLHTTCGRRKKKEENKQNSVAGGRRRRCVVAAGR 180
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 52479790 52480410 - Lag0013755.1 Lac1g3263 596834
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3263 180 ProSiteProfiles Protein kinase domain profile. 18 180 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3263 180 SMART serkin_6 18 167 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3263 180 FunFam Non-specific serine/threonine protein kinase 10 97 - -
Lac1g3263 180 Gene3D Phosphorylase Kinase; domain 1 13 97 - -
Lac1g3263 180 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524(InterPro)
Lac1g3263 180 ProSitePatterns Serine/Threonine protein kinases active-site signature. 110 122 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3263 180 Pfam Protein kinase domain 99 153 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3263 180 Pfam Protein kinase domain 18 97 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3263 180 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 98 154 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac1g3263 180 Gene3D Transferase(Phosphotransferase) domain 1 98 156 - -
Lac1g3263 180 SUPERFAMILY Protein kinase-like (PK-like) 15 153 IPR011009 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3263 Lac-Chr1:52479790 Lac6g2847 Lac-Chr6:46079680 6.80E-77 dispersed
Lac1g3263 Lac-Chr1:52479790 Lac3g0204 Lac-Chr3:1447243 2.00E-60 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85953 PF00069 Pkinase 9.60E-18 CL0016 Lac PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3263 - - - 0.0