Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3266 ATGGCGGCTCCATTTCCGGATGATTTCAAGTGCCCAATTTCTCTGGAGATAATGTCCGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGCTCTTCCATCCAACGGTGGCTCGACGCCGGTCACCGGACTTGCCCAATCACCCAGTTGCCCCTTCCTGAAAATCCTTCCCTAATCCCTAACCATGCCCTCAGAAGCTTAATTTCAAATTTCAACCCTGTTTCCCTTGCCAAGCCGTTTCTCCCTCATCCGCCGCCCCAAACCCTAATCTCGATTCTCGTCTCTCCTTCTTCTTCCCTCGATTCCAAGCTCGATTGCCTCAATCAACTCGCCAGGGTTTCAAAGCGCGATTCCGCTATGCGGAGAAGATTGACCGAGTCCGGTGCCGTCTCGGCCGTTCTTAAATGCGTCGGTTCTGACGATCCGAGCCTCCAAGAGAAGGCTCTCTCGCTGTTGTTGAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCTATTGGCCTCATCGTGGCTGCTCTTCAAGCCAGGTCCCCCGATTGCAGAGCCGTTGCGGCCACGATGCTGACGAGCTTAGCCGTGGTGGAGGTTAACAAGGCTACGATTGGGGCTTATCCCTACGCGATTCGTTCTCTTGTTTGTCTCTTACGGAACGGCAACAACAGAGAGCAGAAGGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCAGGGAACCGTGTGCGGGCTGTGGAATGTGGGGCTGTTCCAATTTTGCTTAAAATTGCGAATTCTGGGCTGGATAGAGCAGTGGAGGTTCTGGGGCTTGTGGCCAAGTGTAGGGAAGGTCGAGAAGAGATGCAACGGTTCAATGGATGTGTGGAGATTTTGGGACGTGTGTTGAGAATTGGAGCCCCAAGAGGAGTTCAATATGCTCTTCTAACTCTGAGTTCTCTCTGTTGCCACAGCGAGCGAATGTGCGTGGAGGCCAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATAATGAAAAGATCAGAGCAAACGCTGCAAATTTGATTCATATACTGCGAGGAAACAACACATGA 1098 51.18 MAAPFPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPENPSLIPNHALRSLISNFNPVSLAKPFLPHPPPQTLISILVSPSSSLDSKLDCLNQLARVSKRDSAMRRRLTESGAVSAVLKCVGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLIVAALQARSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSLVCLLRNGNNREQKEAATALYAICSFPGNRVRAVECGAVPILLKIANSGLDRAVEVLGLVAKCREGREEMQRFNGCVEILGRVLRIGAPRGVQYALLTLSSLCCHSERMCVEARREGVLGICMTLIDDDNEKIRANAANLIHILRGNNT 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52505518 52506615 - Lag0013758.1 Lac1g3266 596837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3266 365 PANTHER U BOX DOMAIN-CONTAINING 6 361 - -
Lac1g3266 365 SMART arm_5 200 241 IPR000225 GO:0005515(InterPro)
Lac1g3266 365 SMART arm_5 118 158 IPR000225 GO:0005515(InterPro)
Lac1g3266 365 SMART arm_5 279 320 IPR000225 GO:0005515(InterPro)
Lac1g3266 365 SMART arm_5 159 199 IPR000225 GO:0005515(InterPro)
Lac1g3266 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Lac1g3266 365 SUPERFAMILY RING/U-box 3 72 - -
Lac1g3266 365 Pfam U-box domain 6 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac1g3266 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Lac1g3266 365 Gene3D - 269 365 IPR011989 -
Lac1g3266 365 Gene3D - 84 268 IPR011989 -
Lac1g3266 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac1g3266 365 SMART Ubox_2 8 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac1g3266 365 CDD RING-Ubox_PUB 6 53 IPR045210 -
Lac1g3266 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515(InterPro)
Lac1g3266 365 FunFam RING-type E3 ubiquitin transferase 4 76 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3266 Lac-Chr1:52505518 Lac8g2874 Lac-Chr8:45883322 1.40E-28 dispersed
Lac1g3266 Lac-Chr1:52505518 Lac13g0211 Lac-Chr13:1500582 4.20E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3266 K27970 - csv:101213883 644.425