Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3267 ATGGGTAGTAGCTGCAGAAAGGTTGCTGGGTTTCTTCAGTTCTTAGTCATTTCGTTCTTCCTCTGCTTTTCTCCTCTGTTTTGTGGCGCTGCAAATTCAATCACAAGGGGCAGAGAGATAAGAGACGGTACTAACGAAACCCTCATCTCCGCGAATGAGCACTATGAGCTGGGATTCTTCAGCCCCAAAAACTCTTCATCACGGTACGTTGGGATATGGTATCACAAGATCGAGGAACAGTCGGTTTTTTGGGTTGCAAATAGAGATGCGCCACTTCTTAATGGAGAAGGGGTTTTGAAAATCGGAGACGATGGAAATTTGGTCGTTCTTGACGGCAACAATGTCTCTCTTTGGACAAGCAACATCACAGCGAATGCGTCTGATCCCAGAAACTTAACTCTGCATAATAATGGAGAATTGATTCTCTCGAGCGGAGAGGACTCGTCGAAAGTCCATTGGAGCAGCTTCGAACACCCCACAGATACATTTCTTCCGAATATGGAGGTGAAGGTGAACGCGGATATGGGTGAAAAACGGATTTTTATGTCTTGGACATCAGAGACAAATCCGGCCGTCGGAAATTACTGTTTGGGTCTGGATCCTCGTGGAGCCGTACAGATTATTATTTGGAATGGGAAAGATCGATGGTGGAGAAGCGGTCACTGGGATAAGCAGATTTTTTCTGGGGTTCCAAACATGCGTTCTACGTCGTGGTACGGTTTCAAGGTTAACACTGAACGTCGAGACGAAATAATTGTAAATTTTCATCCATTGAATAACTCCGATGAGCTGAAATTTCAAATACGGTGGGATGGTAAAGAAGCACAGCAGCGATGGAACGAAGCGAGTCGCGAATGGGATACTATTCGCTTACTGCCTTCTAACGATTGCGATTTCTATAATTTTTGTGGGGATTTTGGGGTTTGTTCTGAAACGAGTCACCCCAAGTGTAGTTGCCTTCCAGGGTTTGTACCCAAAAACAACGATCGATGGAACAAACAGAATTGGTCCGATGGCTGCCAGAGAAGGACTCCATTGCTTCAGCAAAGGAGGAACAGTCATCCGAATGGAACTACTGAGGACGGTGAGGAAGATGGGTTTACAGCTCTACAGTCTGTGAAATTGCCCGATTTCATAACTGGAGTATTTGTGGACTCGTGTAGTGGTAGATGTTCGAACAGTTCTTCGTGTATTGCATATTCGGATGCTCCTGGAATTGGCTGCGTTACGTGGGATGGACCCTTGATTGATATTCAGAAATTTGATGGCGCTGGGAATATTTTGAACATTCGTGTCGCTCATTCTGATTTAGAACCTGTAGATAGCAAGAGCAAATTGTCGGCCGGTGTGATAGTATTGATATGTTTAGGAGGAGCAGCTGCCATAGCCGCATTGGCATTGCTGCTATGGAAATTCAGAGGCAAAATGAAAGATTCACCAGCTGCTGCTTCGAGTAAACCTCAGACCAACACTGAAGTACCAATGTTTGACCTGAGCAAGAGCAGAGAATTTTCAGCAGAACTTTCAGGGCCATACGAATTAAGCATAGAAGGAGGGCAACTGAGTGGACCAGATTTGCCAATGTTCAATTTCAACTGTATAGCTGTGGCTACTGACAACTTTTCTGAGGAAAACAAGCTTGGCCAGGGAGGTTTTGGCCCGGTATACAGGGGAAAGCTACCAAGTGGACAAGAAATTGCCGTGAAGAGGCTCTCAGTTCGGTCTGGCCAAGGTCTAGAAGAGTTTAAGAATGAGATCATACTGATAGGAAAGTTGCAGCATCGAAACCTCGTCAGACTGTTGGGCTACTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCGAACAAAAGCTTGGATTGGTTTCTTTTCGATCCAAATAAGCAGGCTCTACTAGATTGGAAGAAACGGGTGTCAATCATCGAAGGAATTGCACGAGGGTTGCTGTACCTTCATAGAGACTCTAGACTTCTTATTATTCATAGAGATTTGAAAGCTAGCAATATTTTGTTGGATGAAGACATGAATCCAAAGATATCAGACTTTGGCATGGCTAGAATATTTGGTGGAAACCAAAACGAAGCGACAAATACAATTCGAGTCGTTGGCACATACGGTTACATGGCTCCAGAGTATGCAATGGAAGGTCTATTTTCAGTGAAATCAGATGTCTATAGTTTTGGCGTGTTATTATTAGAATTGATATGTGGTCGGAGGAACACTAGCTTTCGCTCAACCGAATACTTAACCCTTATTGGCTATGCTTGGAATCTTTGGAATGATGGAAGATCGGTTGAACTCCTCGACCCGTCTATTCGTGATTCATCGGTCGAGAATGAAGTATTGAAATGCATACATGTAGCAATGCTGTGTGTACAAGACTCCCCAGCTTATAGACCAACACTGCAGTCCGTAGTGCTAATGCTGGAGAGTGAATCTACATCTCTGCCACAGCCAAGACAACCCACCTATACTTCCACAAGAGCCTCCATCGATACAGACTTGTTTACAGAAGGCCACGACATTGTATCGTCAAACGACGTAACGGTAACAATGTTGGATGGTAGATAG 2580 44.42 MGSSCRKVAGFLQFLVISFFLCFSPLFCGAANSITRGREIRDGTNETLISANEHYELGFFSPKNSSSRYVGIWYHKIEEQSVFWVANRDAPLLNGEGVLKIGDDGNLVVLDGNNVSLWTSNITANASDPRNLTLHNNGELILSSGEDSSKVHWSSFEHPTDTFLPNMEVKVNADMGEKRIFMSWTSETNPAVGNYCLGLDPRGAVQIIIWNGKDRWWRSGHWDKQIFSGVPNMRSTSWYGFKVNTERRDEIIVNFHPLNNSDELKFQIRWDGKEAQQRWNEASREWDTIRLLPSNDCDFYNFCGDFGVCSETSHPKCSCLPGFVPKNNDRWNKQNWSDGCQRRTPLLQQRRNSHPNGTTEDGEEDGFTALQSVKLPDFITGVFVDSCSGRCSNSSSCIAYSDAPGIGCVTWDGPLIDIQKFDGAGNILNIRVAHSDLEPVDSKSKLSAGVIVLICLGGAAAIAALALLLWKFRGKMKDSPAAASSKPQTNTEVPMFDLSKSREFSAELSGPYELSIEGGQLSGPDLPMFNFNCIAVATDNFSEENKLGQGGFGPVYRGKLPSGQEIAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFDPNKQALLDWKKRVSIIEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLELICGRRNTSFRSTEYLTLIGYAWNLWNDGRSVELLDPSIRDSSVENEVLKCIHVAMLCVQDSPAYRPTLQSVVLMLESESTSLPQPRQPTYTSTRASIDTDLFTEGHDIVSSNDVTVTMLDGR 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52510724 52514076 - Lag0013759.1 Lac1g3267 596838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3267 859 Gene3D Transferase(Phosphotransferase) domain 1 617 830 - -
Lac1g3267 859 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 223 IPR036426 -
Lac1g3267 859 PIRSF SRK 5 859 IPR024171 GO:0004674(InterPro)
Lac1g3267 859 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Lac1g3267 859 Pfam Protein tyrosine and serine/threonine kinase 544 809 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3267 859 CDD STKc_IRAK 547 813 - -
Lac1g3267 859 CDD B_lectin 43 159 IPR001480 -
Lac1g3267 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 156 - -
Lac1g3267 859 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 23 825 - -
Lac1g3267 859 Gene3D - 28 156 IPR036426 -
Lac1g3267 859 CDD PAN_AP_plant 360 433 - -
Lac1g3267 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 507 616 - -
Lac1g3267 859 Gene3D Phosphorylase Kinase; domain 1 515 616 - -
Lac1g3267 859 Pfam Domain of unknown function (DUF3403) 814 859 IPR021820 GO:0004674(InterPro)
Lac1g3267 859 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544(InterPro)
Lac1g3267 859 ProSiteProfiles Bulb-type lectin domain profile. 31 155 IPR001480 -
Lac1g3267 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3267 859 SUPERFAMILY Protein kinase-like (PK-like) 526 836 IPR011009 -
Lac1g3267 859 Pfam PAN-like domain 363 418 IPR003609 -
Lac1g3267 859 Pfam D-mannose binding lectin 82 184 IPR001480 -
Lac1g3267 859 ProSiteProfiles Protein kinase domain profile. 541 827 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3267 859 SMART serkin_6 541 812 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3267 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 617 820 - -
Lac1g3267 859 MobiDBLite consensus disorder prediction 344 364 - -
Lac1g3267 859 SMART blect_4 39 159 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0792 Lac-Chr10:6222306 Lac1g3267 Lac-Chr1:52510724 1.40E-174 dispersed
Lac10g0793 Lac-Chr10:6237608 Lac1g3267 Lac-Chr1:52510724 3.60E-197 dispersed
Lac1g3267 Lac-Chr1:52510724 Lac5g1623 Lac-Chr5:33054586 3.30E-169 dispersed
Lac1g3267 Lac-Chr1:52510724 Lac10g0779 Lac-Chr10:6135944 1.50E-56 wgd
Lac1g3267 Lac-Chr1:52510724 Lac12g0656 Lac-Chr12:6838027 3.50E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85954 PF07714 PK_Tyr_Ser-Thr 4.50E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3267 - - - 0.0