Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3304 ATGAGGAAGAACAAGCCAAAGGGTCGGGCCAAGGCCGGAGGCATCAAGCCTTGGCCCAAGGCTGAGGCCGACCACTCGGCCCACTTGCGTGGGTCGAGTCCTTCCGCATCTGTTTGGTCTCTGTTGTCCCTGTTCCACTCGGTTCTGGGTCGCCTCCGAACGCCTAAGAAAACTCTAACGGAAGACACATGTATAAATGGGATCTCCTACACCAAAAAAAGGGTCCTCCCCGTCGTTTTTATCATTTTCCTCACTTCTAGGGTTTCAACTGTCATGGGCCTCGACTCCGCGTTTGGGCTTATTGGGTCGAGGCCAACCGTTTACTTCGGCCTCTCCCTTGGGCCGAGGCCGAGGCCGAGGGAGGTGAGTGTGGGTCGAGGTGGATCTCGACCTTCTCCTGCAGCTCAATCTTCCATTCTGGGTTGTGGGGTTCTGATCTTGGTTGCTTTGGAGTTTTGGGGTTGTGTGATGATCCTTATTGGTCTGCTCTTGGTCTCGATGAAACCCTTTTGCTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTATTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTTGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAACTCAGTGGCTTGAATTTGGGAGGAGAGCTAGGTACTAGCCTGGACCAATTCGAGTCAATAATATCAATGGATGTCAGCAACAACCATATTGGAGGGAATATTCCGTCTACATTGCCCGCTACTCTGAGAAGTTTTTCTTTGTCAGCTAATCAGTTCACTGGAAGTATTCCCTCTGCATTGGCCTCGTTAACACAATTGATGGACCTGTCATTAAAAAATAACCTTCTTACCGGGGTAATACCTGATGTCTTCCAGCAACTTAATGGGTTGAATATCTTGGACTTGTCTAACAACAACTTGAGCGGCCAGCTGCCTCCCTCAGTAGCCAATTTGTTCTCCCTGACTACATTGCACTTGCAGAACAATCAACTTTCTGGGATGCTCGACCCTCTACAGGATCTTCCGTTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGAAACCCTTTTAATACTACGATAATTCCATCTGCACCTGCTTTAGCTCCTTCACCATTTGCTATGGCGCCAGTGATTGTGGGACAACCAGCCAGACAGACAGGTGCAGGTCAGCCATTGTCATCGGGAACTCCTGAATCAGATGGAGCAAGGAGTTTTTTCTCTGCTAAGCGGATCATTTGGATTGTTATAATTGGCACTGTAATACTAGTGGCATTGGGATTCTGTCTTCTTGTGTCGATATGCTTGAAAAGAAGCAAGCATCGAGAAGACACCAAGATGCTTCGTGACGATAATGACATGTCTTCTAAATATAAGCCTAAACCCACGAAGCCCTCAGTTGAAATTGATGACATGGAGAAAGGTCAAAGGGAGACCACTCTTAAGCCACTTGAAAGAGACAGAGTGAAGGATAGCATAATGGATTTTACCACCCCAAGGCTACATGATAGACTGGAGGCAAATGGGAAAAGAAAAGATGCATCTAGTACGAGTTTTCGTAAAAACCATACAGAGAGTTCAAGCATAAGCATGGATGACTTCCCTGTACCGCCTCCTCCACCTCCTTTTCCGCTCCTTTCAACTCAGGAGATTGCAAAACCAATTGTGGCAGCTGAAGTATCTAGTAGAGTACCTAAAAAACTGAACTCAAGTTCTATAAAAGTTTTCACGATCGCATCACTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAGAGGCATGTTTGGCAGTGTCTATAGGGCTGAACTTCCAAGTGGAAGGCTTCTGGCTGTTAAAAAACTGAGTGGATCCTCCTCAATGCGTTGGAATGACGATGAATTTCACAGCCTTGTATCTAATATATGCAAAATTCGGCATGATAACATCGTGGAGCTTGTGGGCTATTGTGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGCAAAAATGGCACACTCTATGACGTACTCCATGTCGACAAGGAGATGCATCAAAAGCTTTCGTGGAATGTACGCGTGAGGATTGCACTTGGAGCTGCAAGAGCGCTTGAGTATCTGCATGAGGCCTGTCAACCACCTATCATGCACCAAAATTTTAAGTCTGCTAACATTCTCTTGGACAATGAGTTAAAAGCGCAGGTCTCTGACTCTGGCTTAGCTCCGCTGCTTTCTTCAGCTAGTCAGTCGTCTGTGCGTTTCGTCCCAGCTCATGGTTATAGTGCTCCTGAATTTGAGTCAGGAACTTACACGTACCAAAGTGATATCTTTAGCTTCGGAGTTGTAATGCTGGAGCTTCTCACTGGCCGGAAGTCGTGTGACCGATCACTACCTCGAGGAGAGCAATTTCTTGTTCGATGGGCTGTTCCAAGGCTCCATGACATTGATGCGTTATCAAGAATGGTTGATCCATCTCTTAATGGCATGTATCCAATTAAGTCGTTATCGCGCTTTGCTGATATTATTTCCTCTTGTATAATGGTAAACTTCTCTACAACTTTTGCTTCATATCCAAGTTACTATGGATATTTACTTGTCTTTACCGATGTTTTCGACCAACCTTTTGGCAGAGAGAGCCCGAATTTCGGCCCCCGATCTCTGAAATCGTACAGGAACTCTTACAGATGCTCTAGAAGAAAGTCAGATATTGAAATGCTTTGGGAGCTTGGTAGAAGATCAGACAAGATGTTGAACATCAAAATTGGTAACCAAAAAGTTTTAGGAGTAGATCTCACTATATTTTTCTCTTTGGGCAAAGAGGCATGCTTTTAG 2925 45.09 MRKNKPKGRAKAGGIKPWPKAEADHSAHLRGSSPSASVWSLLSLFHSVLGRLRTPKKTLTEDTCINGISYTKKRVLPVVFIIFLTSRVSTVMGLDSAFGLIGSRPTVYFGLSLGPRPRPREVSVGRGGSRPSPAAQSSILGCGVLILVALEFWGCVMILIGLLLVSMKPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISMDVSNNHIGGNIPSTLPATLRSFSLSANQFTGSIPSALASLTQLMDLSLKNNLLTGVIPDVFQQLNGLNILDLSNNNLSGQLPPSVANLFSLTTLHLQNNQLSGMLDPLQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIIPSAPALAPSPFAMAPVIVGQPARQTGAGQPLSSGTPESDGARSFFSAKRIIWIVIIGTVILVALGFCLLVSICLKRSKHREDTKMLRDDNDMSSKYKPKPTKPSVEIDDMEKGQRETTLKPLERDRVKDSIMDFTTPRLHDRLEANGKRKDASSTSFRKNHTESSSISMDDFPVPPPPPPFPLLSTQEIAKPIVAAEVSSRVPKKLNSSSIKVFTIASLQQYTNSFSEDNLLGRGMFGSVYRAELPSGRLLAVKKLSGSSSMRWNDDEFHSLVSNICKIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDVLHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKAQVSDSGLAPLLSSASQSSVRFVPAHGYSAPEFESGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGMYPIKSLSRFADIISSCIMVNFSTTFASYPSYYGYLLVFTDVFDQPFGRESPNFGPRSLKSYRNSYRCSRRKSDIEMLWELGRRSDKMLNIKIGNQKVLGVDLTIFFSLGKEACF 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52814334 52823543 - Lag0013796.1 Lac1g3304 596875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3304 974 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 700 883 - -
Lac1g3304 974 Pfam Protein tyrosine and serine/threonine kinase 626 822 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3304 974 MobiDBLite consensus disorder prediction 1 29 - -
Lac1g3304 974 ProSiteProfiles Leucine-rich repeat profile. 337 359 IPR001611 GO:0005515(InterPro)
Lac1g3304 974 ProSiteProfiles Protein kinase domain profile. 622 895 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3304 974 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 176 402 - -
Lac1g3304 974 SUPERFAMILY Protein kinase-like (PK-like) 599 881 IPR011009 -
Lac1g3304 974 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 590 699 - -
Lac1g3304 974 Gene3D Phosphorylase Kinase; domain 1 586 699 - -
Lac1g3304 974 MobiDBLite consensus disorder prediction 481 520 - -
Lac1g3304 974 Gene3D Ribonuclease Inhibitor 185 399 IPR032675 -
Lac1g3304 974 SUPERFAMILY L domain-like 181 383 - -
Lac1g3304 974 MobiDBLite consensus disorder prediction 534 570 - -
Lac1g3304 974 ProSitePatterns Protein kinases ATP-binding region signature. 628 651 IPR017441 GO:0005524(InterPro)
Lac1g3304 974 Gene3D Transferase(Phosphotransferase) domain 1 700 883 - -
Lac1g3304 974 PANTHER LEUCINE RICH REPEAT KINASE 2 217 878 IPR051420 -
Lac1g3304 974 MobiDBLite consensus disorder prediction 534 553 - -
Lac1g3304 974 Pfam Leucine rich repeat 265 324 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3304 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3304 Lac-Chr1:52814334 Lac4g3072 Lac-Chr4:48844313 1.80E-94 dispersed
Lac1g3304 Lac-Chr1:52814334 Lac12g0685 Lac-Chr12:7156009 9.90E-146 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g0685 . 34 777 Strubbelig Receptor Gene Family AT4G03390 62.7 3.1e-203 706.1
Lac1g3304 . 175 877 Strubbelig Receptor Gene Family AT4G03390 55.1 4.5e-157 552.7
Lac10g2573 . 107 833 Strubbelig Receptor Gene Family AT5G06820 54.9 6.9e-192 668.3
Lac8g1144 . 22 696 Strubbelig Receptor Gene Family AT1G78980 61.0 9.2e-186 647.9
Lac4g3072 . 24 690 Strubbelig Receptor Gene Family AT1G78980 52.4 3.4e-132 469.9
Lac8g1144 . 4 674 Strubbelig Receptor Gene Family AT3G13065 53.6 2.1e-142 503.8
Lac10g1387 . 390 683 Strubbelig Receptor Gene Family AT1G11130 53.7 3.1e-85 313.9
Lac10g2573 . 107 833 Strubbelig Receptor Gene Family AT5G06820 54.9 6.9e-192 668.3
Lac12g0685 . 34 777 Strubbelig Receptor Gene Family AT4G03390 62.7 3.1e-203 706.1
Lac1g3304 . 175 877 Strubbelig Receptor Gene Family AT4G03390 55.1 4.5e-157 552.7
Lac8g1144 . 4 674 Strubbelig Receptor Gene Family AT3G13065 53.6 2.1e-142 503.8
Lac8g1144 . 22 696 Strubbelig Receptor Gene Family AT1G78980 61.0 9.2e-186 647.9
Lac4g3072 . 24 690 Strubbelig Receptor Gene Family AT1G78980 52.4 3.4e-132 469.9
Lac12g2502 . 255 973 Strubbelig Receptor Gene Family AT1G53730 55.1 1.2e-201 700.7
Lac4g3072 . 1 712 Strubbelig Receptor Gene Family AT1G53730 61.6 2.3e-192 669.8
Lac8g1144 . 5 682 Strubbelig Receptor Gene Family AT1G53730 51.4 4.0e-152 536.2
Lac12g2502 . 265 977 Strubbelig Receptor Gene Family AT3G14350 51.0 1.6e-182 637.1
Lac4g3072 . 10 696 Strubbelig Receptor Gene Family AT3G14350 56.4 9.7e-172 601.3
Lac10g1387 . 338 713 Strubbelig Receptor Gene Family AT4G22130 81.9 2.6e-175 612.8
Lac12g2502 . 661 989 Strubbelig Receptor Gene Family AT4G22130 63.4 1.2e-119 427.9
Lac4g3072 . 391 704 Strubbelig Receptor Gene Family AT4G22130 65.8 3.0e-118 423.3
Lac12g0685 . 474 769 Strubbelig Receptor Gene Family AT4G22130 62.0 1.5e-106 384.4
Lac8g1144 . 346 696 Strubbelig Receptor Gene Family AT4G22130 52.5 1.4e-99 361.3
Lac10g2573 . 485 807 Strubbelig Receptor Gene Family AT4G22130 52.6 8.7e-94 342.0
Lac1g3304 . 610 877 Strubbelig Receptor Gene Family AT4G22130 60.0 1.7e-89 327.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85955 PF07714 PK_Tyr_Ser-Thr 3.20E-35 CL0016 Lac PK