Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3304 ATGAGGAAGAACAAGCCAAAGGGTCGGGCCAAGGCCGGAGGCATCAAGCCTTGGCCCAAGGCTGAGGCCGACCACTCGGCCCACTTGCGTGGGTCGAGTCCTTCCGCATCTGTTTGGTCTCTGTTGTCCCTGTTCCACTCGGTTCTGGGTCGCCTCCGAACGCCTAAGAAAACTCTAACGGAAGACACATGTATAAATGGGATCTCCTACACCAAAAAAAGGGTCCTCCCCGTCGTTTTTATCATTTTCCTCACTTCTAGGGTTTCAACTGTCATGGGCCTCGACTCCGCGTTTGGGCTTATTGGGTCGAGGCCAACCGTTTACTTCGGCCTCTCCCTTGGGCCGAGGCCGAGGCCGAGGGAGGTGAGTGTGGGTCGAGGTGGATCTCGACCTTCTCCTGCAGCTCAATCTTCCATTCTGGGTTGTGGGGTTCTGATCTTGGTTGCTTTGGAGTTTTGGGGTTGTGTGATGATCCTTATTGGTCTGCTCTTGGTCTCGATGAAACCCTTTTGCTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTATTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTTGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAACTCAGTGGCTTGAATTTGGGAGGAGAGCTAGGTACTAGCCTGGACCAATTCGAGTCAATAATATCAATGGATGTCAGCAACAACCATATTGGAGGGAATATTCCGTCTACATTGCCCGCTACTCTGAGAAGTTTTTCTTTGTCAGCTAATCAGTTCACTGGAAGTATTCCCTCTGCATTGGCCTCGTTAACACAATTGATGGACCTGTCATTAAAAAATAACCTTCTTACCGGGGTAATACCTGATGTCTTCCAGCAACTTAATGGGTTGAATATCTTGGACTTGTCTAACAACAACTTGAGCGGCCAGCTGCCTCCCTCAGTAGCCAATTTGTTCTCCCTGACTACATTGCACTTGCAGAACAATCAACTTTCTGGGATGCTCGACCCTCTACAGGATCTTCCGTTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGAAACCCTTTTAATACTACGATAATTCCATCTGCACCTGCTTTAGCTCCTTCACCATTTGCTATGGCGCCAGTGATTGTGGGACAACCAGCCAGACAGACAGGTGCAGGTCAGCCATTGTCATCGGGAACTCCTGAATCAGATGGAGCAAGGAGTTTTTTCTCTGCTAAGCGGATCATTTGGATTGTTATAATTGGCACTGTAATACTAGTGGCATTGGGATTCTGTCTTCTTGTGTCGATATGCTTGAAAAGAAGCAAGCATCGAGAAGACACCAAGATGCTTCGTGACGATAATGACATGTCTTCTAAATATAAGCCTAAACCCACGAAGCCCTCAGTTGAAATTGATGACATGGAGAAAGGTCAAAGGGAGACCACTCTTAAGCCACTTGAAAGAGACAGAGTGAAGGATAGCATAATGGATTTTACCACCCCAAGGCTACATGATAGACTGGAGGCAAATGGGAAAAGAAAAGATGCATCTAGTACGAGTTTTCGTAAAAACCATACAGAGAGTTCAAGCATAAGCATGGATGACTTCCCTGTACCGCCTCCTCCACCTCCTTTTCCGCTCCTTTCAACTCAGGAGATTGCAAAACCAATTGTGGCAGCTGAAGTATCTAGTAGAGTACCTAAAAAACTGAACTCAAGTTCTATAAAAGTTTTCACGATCGCATCACTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAGAGGCATGTTTGGCAGTGTCTATAGGGCTGAACTTCCAAGTGGAAGGCTTCTGGCTGTTAAAAAACTGAGTGGATCCTCCTCAATGCGTTGGAATGACGATGAATTTCACAGCCTTGTATCTAATATATGCAAAATTCGGCATGATAACATCGTGGAGCTTGTGGGCTATTGTGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGCAAAAATGGCACACTCTATGACGTACTCCATGTCGACAAGGAGATGCATCAAAAGCTTTCGTGGAATGTACGCGTGAGGATTGCACTTGGAGCTGCAAGAGCGCTTGAGTATCTGCATGAGGCCTGTCAACCACCTATCATGCACCAAAATTTTAAGTCTGCTAACATTCTCTTGGACAATGAGTTAAAAGCGCAGGTCTCTGACTCTGGCTTAGCTCCGCTGCTTTCTTCAGCTAGTCAGTCGTCTGTGCGTTTCGTCCCAGCTCATGGTTATAGTGCTCCTGAATTTGAGTCAGGAACTTACACGTACCAAAGTGATATCTTTAGCTTCGGAGTTGTAATGCTGGAGCTTCTCACTGGCCGGAAGTCGTGTGACCGATCACTACCTCGAGGAGAGCAATTTCTTGTTCGATGGGCTGTTCCAAGGCTCCATGACATTGATGCGTTATCAAGAATGGTTGATCCATCTCTTAATGGCATGTATCCAATTAAGTCGTTATCGCGCTTTGCTGATATTATTTCCTCTTGTATAATGGTAAACTTCTCTACAACTTTTGCTTCATATCCAAGTTACTATGGATATTTACTTGTCTTTACCGATGTTTTCGACCAACCTTTTGGCAGAGAGAGCCCGAATTTCGGCCCCCGATCTCTGAAATCGTACAGGAACTCTTACAGATGCTCTAGAAGAAAGTCAGATATTGAAATGCTTTGGGAGCTTGGTAGAAGATCAGACAAGATGTTGAACATCAAAATTGGTAACCAAAAAGTTTTAGGAGTAGATCTCACTATATTTTTCTCTTTGGGCAAAGAGGCATGCTTTTAG 2925 45.09 MRKNKPKGRAKAGGIKPWPKAEADHSAHLRGSSPSASVWSLLSLFHSVLGRLRTPKKTLTEDTCINGISYTKKRVLPVVFIIFLTSRVSTVMGLDSAFGLIGSRPTVYFGLSLGPRPRPREVSVGRGGSRPSPAAQSSILGCGVLILVALEFWGCVMILIGLLLVSMKPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISMDVSNNHIGGNIPSTLPATLRSFSLSANQFTGSIPSALASLTQLMDLSLKNNLLTGVIPDVFQQLNGLNILDLSNNNLSGQLPPSVANLFSLTTLHLQNNQLSGMLDPLQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIIPSAPALAPSPFAMAPVIVGQPARQTGAGQPLSSGTPESDGARSFFSAKRIIWIVIIGTVILVALGFCLLVSICLKRSKHREDTKMLRDDNDMSSKYKPKPTKPSVEIDDMEKGQRETTLKPLERDRVKDSIMDFTTPRLHDRLEANGKRKDASSTSFRKNHTESSSISMDDFPVPPPPPPFPLLSTQEIAKPIVAAEVSSRVPKKLNSSSIKVFTIASLQQYTNSFSEDNLLGRGMFGSVYRAELPSGRLLAVKKLSGSSSMRWNDDEFHSLVSNICKIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDVLHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKAQVSDSGLAPLLSSASQSSVRFVPAHGYSAPEFESGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGMYPIKSLSRFADIISSCIMVNFSTTFASYPSYYGYLLVFTDVFDQPFGRESPNFGPRSLKSYRNSYRCSRRKSDIEMLWELGRRSDKMLNIKIGNQKVLGVDLTIFFSLGKEACF 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52814334 52823543 - Lag0013796.1 Lac1g3304 596875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3304 974 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 700 883 - -
Lac1g3304 974 Pfam Protein tyrosine and serine/threonine kinase 626 822 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3304 974 MobiDBLite consensus disorder prediction 1 29 - -
Lac1g3304 974 ProSiteProfiles Leucine-rich repeat profile. 337 359 IPR001611 GO:0005515(InterPro)
Lac1g3304 974 ProSiteProfiles Protein kinase domain profile. 622 895 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3304 974 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 176 402 - -
Lac1g3304 974 SUPERFAMILY Protein kinase-like (PK-like) 599 881 IPR011009 -
Lac1g3304 974 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 590 699 - -
Lac1g3304 974 Gene3D Phosphorylase Kinase; domain 1 586 699 - -
Lac1g3304 974 MobiDBLite consensus disorder prediction 481 520 - -
Lac1g3304 974 Gene3D Ribonuclease Inhibitor 185 399 IPR032675 -
Lac1g3304 974 SUPERFAMILY L domain-like 181 383 - -
Lac1g3304 974 MobiDBLite consensus disorder prediction 534 570 - -
Lac1g3304 974 ProSitePatterns Protein kinases ATP-binding region signature. 628 651 IPR017441 GO:0005524(InterPro)
Lac1g3304 974 Gene3D Transferase(Phosphotransferase) domain 1 700 883 - -
Lac1g3304 974 PANTHER LEUCINE RICH REPEAT KINASE 2 217 878 IPR051420 -
Lac1g3304 974 MobiDBLite consensus disorder prediction 534 553 - -
Lac1g3304 974 Pfam Leucine rich repeat 265 324 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3304 Lac-Chr1:52814334 Lac4g3072 Lac-Chr4:48844313 1.80E-94 dispersed
Lac1g3304 Lac-Chr1:52814334 Lac12g0685 Lac-Chr12:7156009 9.90E-146 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85955 PF07714 PK_Tyr_Ser-Thr 3.20E-35 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3304 - - - 0.0