Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3332 ATGGACGAAGAGGCTAATTCTTGGCTCAGGAGAACCAAGTTTTCTCACACAGTTTATCATCGATGGGACTCATTAAGATTGAACCCTGTTCCTTTCATTGTCGAACCACCTCACAATTCCGGCTTGAAATCGAGGCCTCAATCAGCTTCATCCGCTCAGAAACCATGTCCTGATATTTCCAAGATTCAACGAAATTACAAATCCAACAAGCAGAGGTCTCTGTCTCCTCTTCCCGAGAGCAACCTCTCTGACGTTTTCAAGGAAGCAAAATCTGAGAGTAAGAGATTCTCAACTCCAACTCCTCGACTTAGAGAACGAACTAGGGAATTCAAGAACAAGTTATTCAACAAGGATCCTCAAGATTCAAAACCGCCCAATTTTAAGCCATCGTTGAATACTAGTCCCCTGAAACACCTAGCTTCCGCCAAAGGAGGTGATAAGTCAAAGTTCAGGAAGGACTCTTCCTGGACCAAATATTTTGAGCCTGGTGGTGGAAGAGTTACCGCGGTCGAATCAGCCGATGACTGGAGTGTTGATCTCTCCAAGTTGTTTCTCGGGTTAAGGTTTGCTCATGGAGCTAACAGTCGTCTTTATCATGGAAAATACAATGATGAACCTGTTGCTGTTAAGATTATTAGAGTGCCTGAGGAAGATGAAAATGGAGCGCTTGCTTCTCGATTGGAGAAGCAATTCACCAGAGAAGTTACCCTTTTATCTCGTCTCCATCATCCGAATGTTATAAAGTTTGTAGCTGCGTGTAGGAAGCCACCAGTTTACTGTGTCATTACTGAATATTTGTCTCAAGGATCATTAAGGGCATACTTACACAAACTTGAGCACCAATGTCTTCCTTTGCAAAAACTAATTGCAATTGCTTTAGATGTCGCTCGTGGCATGGAATACATTCACTCACAAGGCATAATACATCGTGATTTAAAGCCTGAGAATGTTCTTATTGGCGAGGACTTCCACCTGAAAATTGCAGATTTTGGTATAGCTTGTCCTGAGGCCTTTTTTGACCCATTAGCTGATGATCCTGGAACTTACCGATGGATGGCACCGGAGATGATCAAACATAAACCTTATGGTCGGAAGGTCGATGTATACAGCTTTGGGCTTATGTTGTGGGAAATGGTGGCTGGTGCAATTCCTTACGAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAACAAGAATCTTAGGCCTGTTATCTCAAGTGACTGTCCGTTGGCAATGCGAGCGTTAATCGAGCAATGTTGGTCCCTACAACCCGAAAAGAGACCCGATTTCTGGCAAATTGTGAAGGTATTAGAGCAATTCGAGTCTTCGCTTGCCCGTGATGGGACACTGAATTTAATAGGGAACCCTCTGTCTAGTTTTCAAGACCATAAGAAAGGGCTTCTCCATTGGATTCAAAAGCTTGGCCCCCTGCATCCCGAAACCTCGCCCGTGCCGAAACCGAAATTCTCATAA 1479 44.08 MDEEANSWLRRTKFSHTVYHRWDSLRLNPVPFIVEPPHNSGLKSRPQSASSAQKPCPDISKIQRNYKSNKQRSLSPLPESNLSDVFKEAKSESKRFSTPTPRLRERTREFKNKLFNKDPQDSKPPNFKPSLNTSPLKHLASAKGGDKSKFRKDSSWTKYFEPGGGRVTAVESADDWSVDLSKLFLGLRFAHGANSRLYHGKYNDEPVAVKIIRVPEEDENGALASRLEKQFTREVTLLSRLHHPNVIKFVAACRKPPVYCVITEYLSQGSLRAYLHKLEHQCLPLQKLIAIALDVARGMEYIHSQGIIHRDLKPENVLIGEDFHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPYGRKVDVYSFGLMLWEMVAGAIPYEDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSLQPEKRPDFWQIVKVLEQFESSLARDGTLNLIGNPLSSFQDHKKGLLHWIQKLGPLHPETSPVPKPKFS 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53046788 53049442 - Lag0013824.1 Lac1g3332 596903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3332 492 FunFam Serine/threonine-protein kinase isoform 1 173 267 - -
Lac1g3332 492 MobiDBLite consensus disorder prediction 41 80 - -
Lac1g3332 492 Pfam Protein tyrosine and serine/threonine kinase 190 439 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3332 492 FunFam serine/threonine-protein kinase HT1 268 457 - -
Lac1g3332 492 Gene3D Transferase(Phosphotransferase) domain 1 268 460 - -
Lac1g3332 492 MobiDBLite consensus disorder prediction 123 137 - -
Lac1g3332 492 SMART serkin_6 183 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3332 492 CDD STKc_MAP3K-like 190 439 - -
Lac1g3332 492 Gene3D Phosphorylase Kinase; domain 1 171 267 - -
Lac1g3332 492 ProSiteProfiles Protein kinase domain profile. 183 443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3332 492 MobiDBLite consensus disorder prediction 38 151 - -
Lac1g3332 492 PANTHER SERINE-THREONINE PROTEIN KINASE 55 441 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac1g3332 492 PRINTS Tyrosine kinase catalytic domain signature 347 357 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3332 492 PRINTS Tyrosine kinase catalytic domain signature 263 276 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3332 492 PRINTS Tyrosine kinase catalytic domain signature 301 319 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3332 492 PRINTS Tyrosine kinase catalytic domain signature 366 388 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3332 492 PRINTS Tyrosine kinase catalytic domain signature 410 432 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3332 492 MobiDBLite consensus disorder prediction 85 118 - -
Lac1g3332 492 SUPERFAMILY Protein kinase-like (PK-like) 167 439 IPR011009 -
Lac1g3332 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0442 Lac-Chr10:3462646 Lac1g3332 Lac-Chr1:53046788 1.30E-95 dispersed
Lac1g3168 Lac-Chr1:51859632 Lac1g3332 Lac-Chr1:53046788 5.60E-89 dispersed
Lac1g3332 Lac-Chr1:53046788 Lac5g0072 Lac-Chr5:625725 7.10E-68 dispersed
Lac3g0141 Lac-Chr3:987103 Lac1g3332 Lac-Chr1:53046788 5.00E-58 transposed
Lac8g0205 Lac-Chr8:2314970 Lac1g3332 Lac-Chr1:53046788 4.30E-59 transposed
Lac8g2560 Lac-Chr8:43304097 Lac1g3332 Lac-Chr1:53046788 2.10E-61 transposed
Lac1g3332 Lac-Chr1:53046788 Lac10g0885 Lac-Chr10:7097697 4.80E-189 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85956 PF07714 PK_Tyr_Ser-Thr 1.20E-59 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3332 - - - 0.0