Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g3332 | ATGGACGAAGAGGCTAATTCTTGGCTCAGGAGAACCAAGTTTTCTCACACAGTTTATCATCGATGGGACTCATTAAGATTGAACCCTGTTCCTTTCATTGTCGAACCACCTCACAATTCCGGCTTGAAATCGAGGCCTCAATCAGCTTCATCCGCTCAGAAACCATGTCCTGATATTTCCAAGATTCAACGAAATTACAAATCCAACAAGCAGAGGTCTCTGTCTCCTCTTCCCGAGAGCAACCTCTCTGACGTTTTCAAGGAAGCAAAATCTGAGAGTAAGAGATTCTCAACTCCAACTCCTCGACTTAGAGAACGAACTAGGGAATTCAAGAACAAGTTATTCAACAAGGATCCTCAAGATTCAAAACCGCCCAATTTTAAGCCATCGTTGAATACTAGTCCCCTGAAACACCTAGCTTCCGCCAAAGGAGGTGATAAGTCAAAGTTCAGGAAGGACTCTTCCTGGACCAAATATTTTGAGCCTGGTGGTGGAAGAGTTACCGCGGTCGAATCAGCCGATGACTGGAGTGTTGATCTCTCCAAGTTGTTTCTCGGGTTAAGGTTTGCTCATGGAGCTAACAGTCGTCTTTATCATGGAAAATACAATGATGAACCTGTTGCTGTTAAGATTATTAGAGTGCCTGAGGAAGATGAAAATGGAGCGCTTGCTTCTCGATTGGAGAAGCAATTCACCAGAGAAGTTACCCTTTTATCTCGTCTCCATCATCCGAATGTTATAAAGTTTGTAGCTGCGTGTAGGAAGCCACCAGTTTACTGTGTCATTACTGAATATTTGTCTCAAGGATCATTAAGGGCATACTTACACAAACTTGAGCACCAATGTCTTCCTTTGCAAAAACTAATTGCAATTGCTTTAGATGTCGCTCGTGGCATGGAATACATTCACTCACAAGGCATAATACATCGTGATTTAAAGCCTGAGAATGTTCTTATTGGCGAGGACTTCCACCTGAAAATTGCAGATTTTGGTATAGCTTGTCCTGAGGCCTTTTTTGACCCATTAGCTGATGATCCTGGAACTTACCGATGGATGGCACCGGAGATGATCAAACATAAACCTTATGGTCGGAAGGTCGATGTATACAGCTTTGGGCTTATGTTGTGGGAAATGGTGGCTGGTGCAATTCCTTACGAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAACAAGAATCTTAGGCCTGTTATCTCAAGTGACTGTCCGTTGGCAATGCGAGCGTTAATCGAGCAATGTTGGTCCCTACAACCCGAAAAGAGACCCGATTTCTGGCAAATTGTGAAGGTATTAGAGCAATTCGAGTCTTCGCTTGCCCGTGATGGGACACTGAATTTAATAGGGAACCCTCTGTCTAGTTTTCAAGACCATAAGAAAGGGCTTCTCCATTGGATTCAAAAGCTTGGCCCCCTGCATCCCGAAACCTCGCCCGTGCCGAAACCGAAATTCTCATAA | 1479 | 44.08 | MDEEANSWLRRTKFSHTVYHRWDSLRLNPVPFIVEPPHNSGLKSRPQSASSAQKPCPDISKIQRNYKSNKQRSLSPLPESNLSDVFKEAKSESKRFSTPTPRLRERTREFKNKLFNKDPQDSKPPNFKPSLNTSPLKHLASAKGGDKSKFRKDSSWTKYFEPGGGRVTAVESADDWSVDLSKLFLGLRFAHGANSRLYHGKYNDEPVAVKIIRVPEEDENGALASRLEKQFTREVTLLSRLHHPNVIKFVAACRKPPVYCVITEYLSQGSLRAYLHKLEHQCLPLQKLIAIALDVARGMEYIHSQGIIHRDLKPENVLIGEDFHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPYGRKVDVYSFGLMLWEMVAGAIPYEDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSLQPEKRPDFWQIVKVLEQFESSLARDGTLNLIGNPLSSFQDHKKGLLHWIQKLGPLHPETSPVPKPKFS | 492 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 53046788 | 53049442 | - | Lag0013824.1 | Lac1g3332 | 596903 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g3332 | 492 | FunFam | Serine/threonine-protein kinase isoform 1 | 173 | 267 | - | - | |
Lac1g3332 | 492 | MobiDBLite | consensus disorder prediction | 41 | 80 | - | - | |
Lac1g3332 | 492 | Pfam | Protein tyrosine and serine/threonine kinase | 190 | 439 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac1g3332 | 492 | FunFam | serine/threonine-protein kinase HT1 | 268 | 457 | - | - | |
Lac1g3332 | 492 | Gene3D | Transferase(Phosphotransferase) domain 1 | 268 | 460 | - | - | |
Lac1g3332 | 492 | MobiDBLite | consensus disorder prediction | 123 | 137 | - | - | |
Lac1g3332 | 492 | SMART | serkin_6 | 183 | 442 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac1g3332 | 492 | CDD | STKc_MAP3K-like | 190 | 439 | - | - | |
Lac1g3332 | 492 | Gene3D | Phosphorylase Kinase; domain 1 | 171 | 267 | - | - | |
Lac1g3332 | 492 | ProSiteProfiles | Protein kinase domain profile. | 183 | 443 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac1g3332 | 492 | MobiDBLite | consensus disorder prediction | 38 | 151 | - | - | |
Lac1g3332 | 492 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 55 | 441 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Lac1g3332 | 492 | PRINTS | Tyrosine kinase catalytic domain signature | 347 | 357 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac1g3332 | 492 | PRINTS | Tyrosine kinase catalytic domain signature | 263 | 276 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac1g3332 | 492 | PRINTS | Tyrosine kinase catalytic domain signature | 301 | 319 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac1g3332 | 492 | PRINTS | Tyrosine kinase catalytic domain signature | 366 | 388 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac1g3332 | 492 | PRINTS | Tyrosine kinase catalytic domain signature | 410 | 432 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac1g3332 | 492 | MobiDBLite | consensus disorder prediction | 85 | 118 | - | - | |
Lac1g3332 | 492 | SUPERFAMILY | Protein kinase-like (PK-like) | 167 | 439 | IPR011009 | - | |
Lac1g3332 | 492 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 307 | 319 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0442 | Lac-Chr10:3462646 | Lac1g3332 | Lac-Chr1:53046788 | 1.30E-95 | dispersed | |
Lac1g3168 | Lac-Chr1:51859632 | Lac1g3332 | Lac-Chr1:53046788 | 5.60E-89 | dispersed | |
Lac1g3332 | Lac-Chr1:53046788 | Lac5g0072 | Lac-Chr5:625725 | 7.10E-68 | dispersed | |
Lac3g0141 | Lac-Chr3:987103 | Lac1g3332 | Lac-Chr1:53046788 | 5.00E-58 | transposed | |
Lac8g0205 | Lac-Chr8:2314970 | Lac1g3332 | Lac-Chr1:53046788 | 4.30E-59 | transposed | |
Lac8g2560 | Lac-Chr8:43304097 | Lac1g3332 | Lac-Chr1:53046788 | 2.10E-61 | transposed | |
Lac1g3332 | Lac-Chr1:53046788 | Lac10g0885 | Lac-Chr10:7097697 | 4.80E-189 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85956 | PF07714 | PK_Tyr_Ser-Thr | 1.20E-59 | CL0016 | Lac | PK |
Pathway information
