Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3336 ATGGACGACAACATCAACAACAACACCCACCATGATCTTCCCCCGTTCCCCTCCGCCATTCTCCTCTCTCCTCCTCAAAATTCCCATGTCCCTATTCTTCCCCAACCCCCCTTGGGATTCTCCTCCACTGCTCCACAATCCTTCTTCTTTACAAATCCTCTTCACGACCAACTCCCCTCTCCCCATTTTCCTCCTTCCTTTCTCTCCTATGCCTTCCCTCTTGGGAACGACCCTACAAATTCTCAAGGGAGAAGGGTTTTGGATGCTTGGAGTACTAAAGTGGCCAGAAGTAAGAGAAGACTCGCTCGCCAAAGAAGCCTTACTTTGAGTAAAACTTCTTCTTCTTCTTCTTCTTCGTCATCTGGGTTTGGTTGTAATGGCGATGAATATTCTAAGGGAACGACAATAACCCATTACCCAAACACTGATTCATCCAACAGAACCAACACCCTTTTTACCTTCTGCACTCCAGATAAGAAGATGATTTTGAGAATGTTGCTGAAGAAAGAGCTGAAGAACAGTGATGTTGGGTCTTTGGGCAGGATTGTCCTCCCCAAGAGGGAGGCTGAAGAGAACCTTCCATTGCTGACTGATAAGGAAGGAATGCAAGTTGTGATAAGAGATGTGAGCTCCAACAGAAAATGGGCCATGAAATACAAGTACTGGGCAAACAACAGAAGTAGAATGTATGTTCTGGAAAACACAGGGGATTTTGTTAAACAAAATGGGCTGTTGATGGGAGATTCAATGACCCTTTACGAGGATGAGTGCAAGAACCTCTACGTGTCGGTTGAAAGAGGTGAGAATCATTCAAGTGTGGAAGAAAATTACGAGATGAGGAACCAACACTCATCAACAGCAACAGAAGCAGCAACTTACACAAACATGAACATTAAAGACGAAGAAGAGGAAGCATCTTTAGCTCTGTTGATAGAAGAGCTCAAACACAAACCCGAAGAAGACGACCTGGAACAACCGCCTTGCAACAATGACAATCTGGTAGTTTCACAAAGCTCAGATTCATACTTTGAAAGAGGTGGATGCAGCTACAATAATATGATCAACACTACTCCTCGACGGGCATCCTCCAACATGGCTGGAAAAGGAAATATTAGTGGGAAGGAAGTGGAAGATTTGCAGGCCATTAATGGCTTTGAAGATTGCTTTGGAGGCCTCGATACTCTGCCTGAAGTTAGTGGATTCAAGTTCCCTCTTTTTGACTGCTTGAACAATGATAGAACGTGA 1245 44.42 MDDNINNNTHHDLPPFPSAILLSPPQNSHVPILPQPPLGFSSTAPQSFFFTNPLHDQLPSPHFPPSFLSYAFPLGNDPTNSQGRRVLDAWSTKVARSKRRLARQRSLTLSKTSSSSSSSSSGFGCNGDEYSKGTTITHYPNTDSSNRTNTLFTFCTPDKKMILRMLLKKELKNSDVGSLGRIVLPKREAEENLPLLTDKEGMQVVIRDVSSNRKWAMKYKYWANNRSRMYVLENTGDFVKQNGLLMGDSMTLYEDECKNLYVSVERGENHSSVEENYEMRNQHSSTATEAATYTNMNIKDEEEEASLALLIEELKHKPEEDDLEQPPCNNDNLVVSQSSDSYFERGGCSYNNMINTTPRRASSNMAGKGNISGKEVEDLQAINGFEDCFGGLDTLPEVSGFKFPLFDCLNNDRT 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53067980 53072007 - Lag0013828.1 Lac1g3336 596907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3336 414 MobiDBLite consensus disorder prediction 1 21 - -
Lac1g3336 414 Pfam B3 DNA binding domain 169 266 IPR003340 GO:0003677(InterPro)
Lac1g3336 414 SUPERFAMILY DNA-binding pseudobarrel domain 166 264 IPR015300 -
Lac1g3336 414 CDD B3_DNA 166 266 IPR003340 GO:0003677(InterPro)
Lac1g3336 414 Gene3D - 158 277 IPR015300 -
Lac1g3336 414 SMART B3_2 167 268 IPR003340 GO:0003677(InterPro)
Lac1g3336 414 MobiDBLite consensus disorder prediction 101 124 - -
Lac1g3336 414 ProSiteProfiles B3 DNA-binding domain profile. 167 268 IPR003340 GO:0003677(InterPro)
Lac1g3336 414 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 100 291 IPR044800 GO:0003700(InterPro)
Lac1g3336 414 MobiDBLite consensus disorder prediction 106 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3336 Lac-Chr1:53067980 Lac4g2024 Lac-Chr4:39820498 4.60E-28 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23376 PF02362 B3 4.40E-17 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3336 K09287 - csv:105436043 399.438