Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3357 ATGGAAGCTGCTGCTTCGGACGGCGAAAATCACAACCACAATAATGATAATATTAACAAAATTACTAACTCAAGTGAGGGTCTTAGCAAGCCCAAGCGCCAGATGAAGACTCCGTTCCAGCTTGAAACCCTCGAGAAAGCCTATGCTGTGGAGACGTACCCATCAGAGTCGATAAGGGCTGAACTCTCGGAGAAATTGGGGCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCACAGGAGGTTGAAGGACAAGAAGGAACCGGCGAAAAAACCGCGAAAGGTGGCACCGACGTTGCCTGATTCTCCCATTGACGAATTGAGAGTGGTGGCCGAGCCGGGTAGTGATTATGCTTCTGGGTCGGGCTCGGGTTCAAGTCCTTTCGGTGATGTTGGGTTGCGTAATGTGGTACCTAGAAGTGTTGGAGACGATATGCCAGTGATGAGAAGGTATTATGAACCTCCACGGTCCGTTTTGGAGCTTAGAGCTATTGCTTGTGTGGAGTCGCAGTTAGGAGAGCCGTTGAGGGAAGACGGACCTATTCTTGGGATTGAATTTGATCCATTACCACCTGATGCTTTCGGAGCACCTATAGGTTGTACTACTATGTCCTTGAGTTTTAAGAACAATGCTTGTCGTGGCTTAATCAGGTTCCAGTGTTTTACTCTAGAACCTGATTCTTGTGTGGCAGAACAGCAGAAGCGATCGGGACATTCGTATGGGGACAAATATGAACAACGGGATGCAAAATCAAATAAAGCGACTCCAAGGGCATTCCCCGAATATCCATTTATGCCAGACCAGTCTAATATTAGAGCTGATGCATATGGACCAGTTGCCCAATCGCATTATCCAGATTCATTAGTTGAGGTTTCAGCATCCAGGACACAATCATTTATGCTTGGTCATGAACAGTTGAACAGGAGCCATAATTACCATGGTCAAGTCTCAAGGGTTCGTCTTCTGTCTCAACAGGAGAAGCAGGGAGTTGCAGTTCCATCTCCTGCTGAAGATAACGCATTTGTTCCTGCAAGGGATTCTTTTGCAAGTATCAGAATGAATTCTCAGTTTACTGATCACCCAATTGTTGGACAAGATAATTCATATGTGTTGCCTGATGGGCATGTTTTTCCAAATGATGTTATCATTAGGATGGAAAGAAAACGCAAGAGTGAAGAAGCTCGTCTGAACAAAGAAGCCGAAGCCCATGAAATAAGAATGCGAAAAGAGCTTGAGAAACAAGATAATTTGAGGAAAAAGAGTGAAGAACGAATGAGGAAAGAAATGGAAAAGCAAGATCGCGAAAGAAGGAGAGAAGAGGAGAGGTTACTACGAGAAAAGCAGCGGGAAGCAGAGAGATTGAAGCGTGAGGAAAGACGTGAACATGAACGGAGGGAAAAGTTTCTGCAGAGGGAGTATTTGAGGGCTGAGAAGAGAAAGCAAAAAGAAGCTATTCGCAAAGAAAAGGAAGCAGTGAGACGCAAAGCTGCTATTGAGAAGGCTACTGCTCGTAGAATTGCCCGTGAGTCTATGGAGCTTATTGAGGACGAACAGCTTGAATTGATGGAACTGGCTGCTGCGAACAAAGGATTATCCTCCATATTAAGTCTTGATCATGACACTTTGCAGAATCTTGAATCTTTCCGAGATTATCTAGTTGCATTTCCACCCAAGTCTGTGCAATTGAAAAAACCTTTCAGCATCCAGCCTTGGATCAATTCAGAGGAGAACATTGGTAACCTTCTCATGGTCTGGAGATTTTTTATTACATTTTCTGATGTTCTAGAGCTATGGCCCTTTACTCTTGATGAGTTTGTTCAAGCTCTTCATGACTATGATTCAAGATTACTGGGTGAGATTCACATTTGTCTTCTGAGACTGATTGTAAAAGATATTGAAGATGTTGCTAGAACACCTTCTGCTGGATTGGGAATGAATCAGAATGGTGTTGCCAATACTGGAGGTGGACATCCACAGATTGTTGAAGGGGCATATGCGTGGGGGTTTGACATTTGCAACTGGCAGAAACATTTAAACCCATTAACATGGCCTGAAATATTTCGACAATTAGCTCTATCAGCTGGATTTGGACCACAGTTGAAGAAGAGGAGTTTGGCATGGTCTGAAATGCGTAGCAATGATGAGGCTAAATGTGGTGAGGACGTAGTTTCTACACTTCGCAATGGTTCTGCAGCTGAAAATGCATTTGCTATCATGCAAGAGAAAGGTTTGTTAGCTCCTCGAAGATCTAGGCATCGGTTAACTCCTGGAACTGTGAAATTTGCTGCTTTTCATGTCCTTTCACTGGAAGGCAGTGAGGGGTTAACAGTACTAGAACTTGCCGAGAAGATACAGAGATCTGGACTTAGAGATCTGTCTACGAGCAAAACACCAGAGGCTTCCATTTCTGTTGCTTTGACAAGGGATACTAAGCTTTTTGAAAGAATAGCACCTTCCACATATCGTGTACGAGCTCCCTATAGGAAGGATCCAGATGATGCCGAGGAAATACTGTCAGTAGCCAGAAAGAAAATTCAGGTATTCCAGAATGGGTTTTTGGCTGGAGAAGATGCTGATGATGTTGAAAGAGACGAAGAATCTGAATGTGACGATGTTGATGAAGATCCTGAAGTTGATGACGTAGCAACAACATCTTTGGTGAATGAAGATGTTAGCAAAGGAGATGCTAACTTAGGAGTTGAGAATGAGAACTTATGTCATGATATTGCTGGAAATCCACAAAATGAAATTGCCAAAGATATACCATCCTTCCCCTTAAGTGGCTCCAAGGACACAAAATATTTAAATATACCTACAGAGCAATATGCTGCTGTTGATGAGACTACTATTAGTGATCTCGATCAAGAAAATATGGAGATTGATGAAAGCAAGGAAGGTGAATCATGGATTCAAGGACTTACAGAAGGTGAATATCATGATCTTAGTGTTGAGGAGCGCTTGAATGCCCTCATCGCCTTAACCAGCATTGCAAATGAAGGAAACTCTATTCGCCTTGTTCTTGAGGATCGTTTGGAAGCTGCAAATGCTGTTAAAAAGCAAATGTTGGCAGAGGCTCAGATTGATAAATCTCGCCTAAAAGAAGAGATCATTACAAAATCTGATTTTCCAATTCACGTAGTGAGCAAGGTGGAAGCTGAACTCAATGGTTCCACTATTGAGGGTGGCCAAAGCCCTTTACCTGTTGCTGAAAATAAGAACAATGAAACAACTCCAAGCACCGCAGAAAACCTCGGTAGTGTGCCTAATGAGAGGGCTACTTTAGTGCCAGATCTTTTCCCAGGCCCAGATAACTTTTTGGCTCATCAATGTGGACACGCTTCAAAGAGGTCACGTTCACAGTTAAAGTCTTATATTGCCCACAGAGCTGAAGAATTGTACACATACAGGTCCTTGCCTCTTGGTCGAGATCGTAGGCGTAATCGATACTGGCAATTCGTTGCGTCTTCTTCTAGTAATGATCCTGGTTCTGGGAGAATCTTTGTTGAAATGTATGATGGAAAATGGAGGCTTATTGATTCTGAAGAGGGCTTTGATGCTCTTTCAATGGCTTTGGACACACGTGGGATTAGAGAATCACACCTACGCATAATGTTGCAAATGATAGAGACATCATTTAAGGAAAATGTTCGGAGGAATCTGCAGTGTGCCAATGTGATGGTACAAAGTAGAATTACTCCTAAAACTGAAAACGATGAATCGAGTTCTAGTCCTGATTGCAACACTAGTTTTAACAGTCCTAGCAGTACTGTTTGCGGTTTAAATCTGGATACAATGACAACATCATCTTCATTCAGAATTGAGCTTGGGAGAAATGAAAACGAAAAGAAGGCTGCATTTAAAAGGTATCAGGACTTGCAGAGGTGGATGTTAAGAGAGTGCTTTAGCACATCAACATTATGTGCCATGAAATTTGGAGAAAAAAGGTGCACATCGCTGTTGGACATTTGTGATTCTTGTCTGTGCTTGTTTGATTCTGAACATTCTCACTGCTCTTCATGCCATCAAACTTTTGGCATTAGTGGGAATGATATTAATTTTTGGAACACAAACGTCACTGTACATGTTCCGTCAGAAGCTTTTCAATCATTTTGGACAGAACATAGGAAAGATTGGGGTGTCAGGATGAAATTATCATCATCTATTGAAGAGCTTCTACAGATATTGACCCTGTTTGAAAGTGTAATCAAGCGAGACTTTCTAAAATCAGAATTTACTACAACAGACGAGCACCTGAGCTCATGTTCCATCTCTGGGAATGTTTTACATGACCCAGCAGATATTGGGTCTGTTATAATATTACCATGGATTCCACGGACTAGTGCAGCTGTTGCTTTAAGGCTTTGTGAGGTAGATGCATCGATATATTATATTGGGTGTGAGAAACCAGAGCCTGACGAGGATAAGGAAATCGGAGAACATATAAACTTTCCTAGTAGATATGTCCAGAATGATGAACGGACTAAACTAAACGAACTGGACTATGATGATCTGATGAAGAAAGAAAACTCAGCTGATCCTAAAAGTTTAAGGAACAGCTACAAGCGTGGTCGAGGGAGTCGAGATTATGGACGTCGTAAAAGGTGGCAGAAAAAAGCTAACGGTTCTAAATCTGGCCGTGTCCGGCAAAGTGTCAAGAGTAATGAGAAGATGAATCAAGGACAGAGGCAACTGGGACAAGGAACACAGGTTATGGGTGTGCGAGGCCGCCGTACGGTAAGGAAGAGAAGGGCTGAGAAGAACATTCCAGATGAAGGATTGATGGGGCTAGTGACCAGTAGTACTCAGAATATAGATGAATCCCCAAAAGAATATATTGGGGAATGGGAGGATGAAAAAATTGATAGGTTCGTGGATATGGAAGATGAAGAGAATGTGATAGAAGACGAAGAGAATGTGATGGAAGATGAAGAAAATGAAGAGAATGTAAACAATGTAGAACCAATGGACTCTGACGACGATGCCCAGGGTGTTGGTTATGAGCAAGGGGGTTGGGAGTTTGGTTTTGAAGGCACCTCCAACAGATGGAATGGTGATTTAGGGATGGCTAGTGATGAGGATGTGGATTTATCCGAGGATTACAATGGCACTGAAGAGGGTGGAAATGATGATATGGAAGAGTTAGACGTTGATACGAGCGAGGAGTCGGATTGTTCACCAAATAGGATAGGCAACAATGGTGGAGGAGAATCCGCTGTTTCAGACGATTATAGTGATTAA 5238 42.65 MEAAASDGENHNHNNDNINKITNSSEGLSKPKRQMKTPFQLETLEKAYAVETYPSESIRAELSEKLGLTDRQLQMWFCHRRLKDKKEPAKKPRKVAPTLPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNVVPRSVGDDMPVMRRYYEPPRSVLELRAIACVESQLGEPLREDGPILGIEFDPLPPDAFGAPIGCTTMSLSFKNNACRGLIRFQCFTLEPDSCVAEQQKRSGHSYGDKYEQRDAKSNKATPRAFPEYPFMPDQSNIRADAYGPVAQSHYPDSLVEVSASRTQSFMLGHEQLNRSHNYHGQVSRVRLLSQQEKQGVAVPSPAEDNAFVPARDSFASIRMNSQFTDHPIVGQDNSYVLPDGHVFPNDVIIRMERKRKSEEARLNKEAEAHEIRMRKELEKQDNLRKKSEERMRKEMEKQDRERRREEERLLREKQREAERLKREERREHERREKFLQREYLRAEKRKQKEAIRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMELAAANKGLSSILSLDHDTLQNLESFRDYLVAFPPKSVQLKKPFSIQPWINSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLGEIHICLLRLIVKDIEDVARTPSAGLGMNQNGVANTGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGFGPQLKKRSLAWSEMRSNDEAKCGEDVVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRAPYRKDPDDAEEILSVARKKIQVFQNGFLAGEDADDVERDEESECDDVDEDPEVDDVATTSLVNEDVSKGDANLGVENENLCHDIAGNPQNEIAKDIPSFPLSGSKDTKYLNIPTEQYAAVDETTISDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALIALTSIANEGNSIRLVLEDRLEAANAVKKQMLAEAQIDKSRLKEEIITKSDFPIHVVSKVEAELNGSTIEGGQSPLPVAENKNNETTPSTAENLGSVPNERATLVPDLFPGPDNFLAHQCGHASKRSRSQLKSYIAHRAEELYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGKWRLIDSEEGFDALSMALDTRGIRESHLRIMLQMIETSFKENVRRNLQCANVMVQSRITPKTENDESSSSPDCNTSFNSPSSTVCGLNLDTMTTSSSFRIELGRNENEKKAAFKRYQDLQRWMLRECFSTSTLCAMKFGEKRCTSLLDICDSCLCLFDSEHSHCSSCHQTFGISGNDINFWNTNVTVHVPSEAFQSFWTEHRKDWGVRMKLSSSIEELLQILTLFESVIKRDFLKSEFTTTDEHLSSCSISGNVLHDPADIGSVIILPWIPRTSAAVALRLCEVDASIYYIGCEKPEPDEDKEIGEHINFPSRYVQNDERTKLNELDYDDLMKKENSADPKSLRNSYKRGRGSRDYGRRKRWQKKANGSKSGRVRQSVKSNEKMNQGQRQLGQGTQVMGVRGRRTVRKRRAEKNIPDEGLMGLVTSSTQNIDESPKEYIGEWEDEKIDRFVDMEDEENVIEDEENVMEDEENEENVNNVEPMDSDDDAQGVGYEQGGWEFGFEGTSNRWNGDLGMASDEDVDLSEDYNGTEEGGNDDMEELDVDTSEESDCSPNRIGNNGGGESAVSDDYSD 1745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53207753 53220148 - Lag0013849.1 Lac1g3357 596928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3357 1745 Pfam DDT domain 576 631 IPR018501 -
Lac1g3357 1745 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1135 1207 IPR028941 -
Lac1g3357 1745 MobiDBLite consensus disorder prediction 857 876 - -
Lac1g3357 1745 CDD homeodomain 32 87 IPR001356 GO:0003677(InterPro)
Lac1g3357 1745 Coils Coil 1626 1646 - -
Lac1g3357 1745 ProSiteProfiles HARE-type HTH domain profile. 757 826 IPR007759 GO:0006355(InterPro)
Lac1g3357 1745 Pfam Homeodomain 30 86 IPR001356 GO:0003677(InterPro)
Lac1g3357 1745 MobiDBLite consensus disorder prediction 1231 1254 - -
Lac1g3357 1745 MobiDBLite consensus disorder prediction 1723 1745 - -
Lac1g3357 1745 MobiDBLite consensus disorder prediction 1626 1654 - -
Lac1g3357 1745 MobiDBLite consensus disorder prediction 1526 1541 - -
Lac1g3357 1745 Pfam HB1, ASXL, restriction endonuclease HTH domain 757 824 IPR007759 GO:0006355(InterPro)
Lac1g3357 1745 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1745 IPR044977 GO:0006357(InterPro)
Lac1g3357 1745 SMART testlast3 575 634 IPR018501 -
Lac1g3357 1745 Gene3D - 21 98 - -
Lac1g3357 1745 Coils Coil 1015 1035 - -
Lac1g3357 1745 SMART HOX_1 29 91 IPR001356 GO:0003677(InterPro)
Lac1g3357 1745 MobiDBLite consensus disorder prediction 1 36 - -
Lac1g3357 1745 MobiDBLite consensus disorder prediction 231 264 - -
Lac1g3357 1745 MobiDBLite consensus disorder prediction 236 254 - -
Lac1g3357 1745 MobiDBLite consensus disorder prediction 410 442 - -
Lac1g3357 1745 MobiDBLite consensus disorder prediction 1542 1568 - -
Lac1g3357 1745 ProSiteProfiles DDT domain profile. 575 634 IPR018501 -
Lac1g3357 1745 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 964 1007 IPR028942 -
Lac1g3357 1745 MobiDBLite consensus disorder prediction 1058 1086 - -
Lac1g3357 1745 MobiDBLite consensus disorder prediction 1691 1720 - -
Lac1g3357 1745 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677(InterPro)
Lac1g3357 1745 SUPERFAMILY Homeodomain-like 21 87 IPR009057 -
Lac1g3357 1745 MobiDBLite consensus disorder prediction 8 31 - -
Lac1g3357 1745 MobiDBLite consensus disorder prediction 1507 1525 - -
Lac1g3357 1745 MobiDBLite consensus disorder prediction 1507 1579 - -
Lac1g3357 1745 MobiDBLite consensus disorder prediction 858 876 - -
Lac1g3357 1745 Coils Coil 382 495 - -
Lac1g3357 1745 MobiDBLite consensus disorder prediction 1626 1745 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0526 Lac-Chr12:5654065 Lac1g3357 Lac-Chr1:53207753 1.80E-288 dispersed
Lac1g3357 Lac-Chr1:53207753 Lac2g2335 Lac-Chr2:32316074 4.60E-61 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23382 PF15613 WSD 2.70E-13 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3357 - - - 0.0