Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3358 ATGGAGTCGCAGTTGCTCTCACGCGCCACCTCCTTCGCCGGCGGCATTCCCACCCTCCGCAAGTTGCACAGAGATACCACTGCGAACAACAACCACGTCGCCTTCGTCCAGACCAGGCCGATCGCCGAGGGAGCCAACTTGATTTGGGGACGACAATTGCGCCCGTCTCTCCTTCTCGATAACCTCTCGGCGCCGAATCTAGTCTCCGCCAAACGGGAGACGGTTCGGCCTACCTTTGCGGCCGCCTCTTCTTCTCCCGCCGGAGGCAGCGATTCCGCCGGGGAGGTTGCTCCGGTGGGCTTCTTCGAGAAGTATCCGGCGTTGGTCACCGGATTCTTCTTCTTCATGTGGTACTTCTTGAACGTGATTTTCAATATCCTCAACAAGAAGATCTATAATTACTTCCCCTATCCTTATTTTGTGTCGCTGATCCATTTGTTAGTTGGGGTGGTGTACTGTTTGATAAGCTGGGTTGTGGGTCTTCCTAAGCGAGCACCTATTGACTCAAACCTCCTGAAGTTGCTGATCCCTGTAGCCTTCTGTCATGCCCTTGGCCACGTCACTAGCAATGTCTCATTCGCAGCTGTTGCTGTCTCATTCACACACACAATCAAAGCTCTGGAACCGTTCTTTAACGCTGCCGCTTCTCAATTCATTTTGGGGCAATCCATTCCCATTACCTTGTGGCTTTCGTTGGCTCCCGTTGTCATTGGTGTGTCAATGGCTTCTTTGACTGAGCTTTCATTCAACTGGACTGGCTTCATTAGTGCTATGATTTCCAATATCTCCTTTACCTACAGAAGTCTTTATTCAAAGAAAGCCATGACTGACATGGACAGCACCAATGTCTATGCCTATATTTCCATCATCGCTCTCCTTTTCTGCATTCCACCTGCTGTAATTGTGGAGGGGCCTCAACTGCTGAAGTTTGGTTTCAATGATGCCATAGCTAAAGTTGGTCTAACCAAATTCGTCTCAGATCTGTTCTGGGTAGGAATGTTTTATCACCTTTACAATCAGCTAGCAACCAACACCCTGGAGAGGGTGGCACCACTTACCCATGCAGTTGGAAATGTGCTGAAACGTGTATTTGTGATTGGATTCTCCATCATTGTCTTTGGTAACAAAATTTCAACACAGACTGGTATTGGAACCAGCATTGCAATTGCAGGTGTCGCACTTTACTCTTACATCAAGGCTAAGATGGAAGAAGAGAAACGACGTAGTTGGGTTTTCTTTTTTCTCCTCCTATCTGAAAGAAGTGTTGTTGTTTTGACAGCGAACAAAGGTGGCTTGAAGAAGCATTGGAGGTGA 1314 48.25 MESQLLSRATSFAGGIPTLRKLHRDTTANNNHVAFVQTRPIAEGANLIWGRQLRPSLLLDNLSAPNLVSAKRETVRPTFAAASSSPAGGSDSAGEVAPVGFFEKYPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSLIHLLVGVVYCLISWVVGLPKRAPIDSNLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSLYSKKAMTDMDSTNVYAYISIIALLFCIPPAVIVEGPQLLKFGFNDAIAKVGLTKFVSDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTGIGTSIAIAGVALYSYIKAKMEEEKRRSWVFFFLLLSERSVVVLTANKGGLKKHWR 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53222348 53227302 - Lag0013850.1 Lac1g3358 596929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3358 437 SUPERFAMILY Multidrug resistance efflux transporter EmrE 152 245 - -
Lac1g3358 437 SUPERFAMILY Multidrug resistance efflux transporter EmrE 325 397 - -
Lac1g3358 437 Pfam Triose-phosphate Transporter family 109 396 IPR004853 -
Lac1g3358 437 PANTHER SOLUTE CARRIER FAMILY 35 103 400 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Lac1g3358 437 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 108 406 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0371 Lac-Chr13:2633022 Lac1g3358 Lac-Chr1:53222348 9.50E-154 dispersed
Lac1g3358 Lac-Chr1:53222348 Lac5g1426 Lac-Chr5:28551689 5.20E-62 dispersed
Lac1g3358 Lac-Chr1:53222348 Lac1g3227 Lac-Chr1:52232091 6.10E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3358 K15283 - csv:101220728 751.125