Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3361 ATGATGTCTCTGTTTCTCTTCCTCTTGCTCTGTTTTCCTCTGTTTTCCGTCGCCCTCAACGAGGAGAGTCAAGTTCTCCTGTCCTTAAAGCGCTCCCTCGAGGATCGTCGCAATATCCTCTCCTCCTGGAACGACAGGGACCCTAATCCCTGTTCATGGTACGGCATCACCTGCGACAACTATCGTCATGTTATTTCCATCGAGCTCCCCAGCTCCGGTATTACTGCCCCTTTCCCTATTCATCTCTGTAGGCTTCGCCATTTACTCTACATTTCTCTTTACAATAATACCTTACATTCCCTTCTTCCGGAGGACATCTCCGATTGTACCCATCTCGAGTATCTTGACCTTGGCCAAAATCTTCTCACCGGTCCTCTCCCTTCCTCCCTTGCTGATTTGCCCAATCTCCGTTACTTGGACTTGTCTGGAAACAATTTCTCCGGCGAAATACCACAGAGCTTCGCTCGGCTACCCAGCCTTGAGGTCTTTTCCCTTATTTTTAATTTTGTTGGGGGTCCGATTCCCCCGTTTCTTGGGAACGTTACTACTCTTAGGATGTTGAATCTCTCTTACAACCCCTTTACGCCCGGAAGAATCCCACCGGAGCTGGGTAACCTGGAGAATCTTGAGGTTCTTTGGTTGACGGATTGTAACTTAGAGGGGGAGATTCCTGACTCGCTCGGTCGGCTCAAGTACCTCGTTCTTCTGGATTTGAGCACGAACATGCTTACTGGGTCCTTCCCGCCGGCGCTGACGGAGTTAACTAGCGTGTCCCAGATTGAGTTGTTTAACAATTCGTTGTCTGGCACGTTACCAAATGGGCTTTCGAAACTCAAGTTCTTGCGGATGTTCGACGTGTCGATGAACCACTTTGTTGGGCCAATTCCTGGCGACTTGTTTGACTTGCCGCTCGAAAGTCTTAATGTGTTTGAGAATCGGTTCGAGGGTATCTTGCCCGAAAGCATGGGGACCTCGAAGACTTTGGCGGAGATCAAGCTATTTAGGAACAGCTTCACGGGGGAGTTACCGAGACATTTGGGAAAATATTCGCCTCTGAAATCGTTGGACATTTCAGACAACTTCTTTACCGGCAGTCTTCCCGAGGGCTTGTGTAAGAATGGGAAATTAGAAGAGGTAATGTTGCTCAACAACAGATTTTCCGGCGAACTCCCGTCGAGTCTCGGTAATTGCCAGTCTCTTTCCAGGTTCCGATTAGCGAACAACTATTTTACGGGTCATGTGCCAGAAAATTTATGGGGACTTCCCAATGTTGCTCTTCTGGAATTTACAAACAACTCCTTCTCTGGTCCAATCTCAAAGAAAATAGGCAATGCCAAGGAGCTGAGTTTGCTTCTTATTTCTCATAACAATTTCTCAGGAACAATTCCGGAGGAGATTGGTTCTTTGCAGAATCTGGTAGATTTTTCCGGTGACCATAACAAGTTCGTAGGACATTTCCCTGAGAGGCTTACGAAAATGGAACGGCTTGTCAAGTTGGATCTTCAAAACAACATGCTTTCCGGGTTGTTAACCAACAAGTTTGAGGCGTGGAGGAAGCTCAATGAGCTCAATCTGGCCAATAATAACTTCTCTGGGGAAATTCCTCCGGAAATTTCTAGCTTGTCAGTGCTTAATTACCTCGATCTTTCAAGTAACCATTTTTCTGGGGAAATCCCAAATGGGTTACAGAATTTGAACCTCAACCTTCTGAATCTATCATTCAATCACTTGACTGGGACGCTTCCTTCCTATTTCGAGGGATCAGGGTACAAAAACAGCTTTCTGGGTAATCCTGATTTGTGTAGGGAGGAGAATGGTGCGTGTAAACTAATTCATTCTCAAAGAAAAGAAGGAGGAGGCATTTGGGTTCTACGAGGCATCTTTATGCTTGCAGTTCTAATTTTCTGTGTGGGAGTGGTTTTGTTCCACATCAAGTACCAGAAATTCCTCAAGGCAAGAAGTCTCAACATCAAATCAAAGTGGACGATGATATCGTTCCACAAGCTCTCTTTCGATGAGGATGAGATTGTGGGTTCCCTAGATGAAGACAATGTGGTAGGCAGTGGAGGCTCTGGCCAAGTTTACAAGGTTGCTCTTGCCAATGGCGAAATCATTGCAGTTAAGAAACTCTGGGCCGAGGTGCCCAAGGACCGCCAGAGCATCGATCTCGAGAACAACTGGGCTGAAGATAATGCTTTTGATGCTGAAGTGAAGACTTTAGGTAAAATCAGGCATAAAAACATAGTCAAACTATGGTGTTGTTGCACTAATGGAGACAGCAGGCTTTTGGTTTATGAATACATGCCTAATGGGAGCTTAGGTGATATGCTTCATGGCAGTAAAAGTGAGTTATTGGATTGGTCAACAAGATACAAGATTGCCTTGGATGCTGCTGAGGGGCTTTCTTATCTTCATCATGATTGTGTTCCTCCAATTGTACACAGAGATGTCAAGTCCAATAACATCTTGTTGGATGCCGATTTCGGAGCCCGTATAGCAGATTTTGGAGTAGCCATGGCCGTTGATATGTCGGCAAATAAATCCATGTCAGTGATTGCTGGTTCTTGTGGTTATATTGCCCCAGAGTATGCTTATACATTGAAAGTGAACGAGAAGACCGACATCTTTAGCTACGGGATGGTCGTCCTTGAATTGATAACCGGGAAGTGCCCGACCGATCCCGAGTTCGAAGAAAACACTCTGGTGAAATGGGTATGCACCACGTTAGAACAGGAAGGCATCAACCATGTTCTAGACCCGAAATTGAATACCTGTCACCATGATGAAATGTTGAAGGTCCTCAACATTGGCCTTCTATGCAGCAGCCCTCTACCTATCAACCGGCCATCCATGAGACAAGTGGTTAAATTGTTGGAAGAAGTTCGAACGGATAGCCATTCGAAGATCGGCAGGAAAGAGGGAAAATTGACGCCGTATTATTTCGAGGATGCTTCGGATAGTGGACGTGTGTCGTTTAAGTAA 2982 45.77 MMSLFLFLLLCFPLFSVALNEESQVLLSLKRSLEDRRNILSSWNDRDPNPCSWYGITCDNYRHVISIELPSSGITAPFPIHLCRLRHLLYISLYNNTLHSLLPEDISDCTHLEYLDLGQNLLTGPLPSSLADLPNLRYLDLSGNNFSGEIPQSFARLPSLEVFSLIFNFVGGPIPPFLGNVTTLRMLNLSYNPFTPGRIPPELGNLENLEVLWLTDCNLEGEIPDSLGRLKYLVLLDLSTNMLTGSFPPALTELTSVSQIELFNNSLSGTLPNGLSKLKFLRMFDVSMNHFVGPIPGDLFDLPLESLNVFENRFEGILPESMGTSKTLAEIKLFRNSFTGELPRHLGKYSPLKSLDISDNFFTGSLPEGLCKNGKLEEVMLLNNRFSGELPSSLGNCQSLSRFRLANNYFTGHVPENLWGLPNVALLEFTNNSFSGPISKKIGNAKELSLLLISHNNFSGTIPEEIGSLQNLVDFSGDHNKFVGHFPERLTKMERLVKLDLQNNMLSGLLTNKFEAWRKLNELNLANNNFSGEIPPEISSLSVLNYLDLSSNHFSGEIPNGLQNLNLNLLNLSFNHLTGTLPSYFEGSGYKNSFLGNPDLCREENGACKLIHSQRKEGGGIWVLRGIFMLAVLIFCVGVVLFHIKYQKFLKARSLNIKSKWTMISFHKLSFDEDEIVGSLDEDNVVGSGGSGQVYKVALANGEIIAVKKLWAEVPKDRQSIDLENNWAEDNAFDAEVKTLGKIRHKNIVKLWCCCTNGDSRLLVYEYMPNGSLGDMLHGSKSELLDWSTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDADFGARIADFGVAMAVDMSANKSMSVIAGSCGYIAPEYAYTLKVNEKTDIFSYGMVVLELITGKCPTDPEFEENTLVKWVCTTLEQEGINHVLDPKLNTCHHDEMLKVLNIGLLCSSPLPINRPSMRQVVKLLEEVRTDSHSKIGRKEGKLTPYYFEDASDSGRVSFK 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53234483 53237672 + Lag0013853.1 Lac1g3361 596932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3361 993 SMART LRR_typ_2 541 564 IPR003591 -
Lac1g3361 993 SMART LRR_typ_2 493 516 IPR003591 -
Lac1g3361 993 SMART LRR_typ_2 85 109 IPR003591 -
Lac1g3361 993 SMART LRR_typ_2 206 230 IPR003591 -
Lac1g3361 993 SMART LRR_typ_2 133 156 IPR003591 -
Lac1g3361 993 Gene3D Ribonuclease Inhibitor 299 616 IPR032675 -
Lac1g3361 993 FunFam Receptor-like protein kinase HSL1 664 767 - -
Lac1g3361 993 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524(InterPro)
Lac1g3361 993 Pfam Protein kinase domain 683 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3361 993 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515(InterPro)
Lac1g3361 993 Pfam Leucine Rich Repeat 566 586 IPR001611 GO:0005515(InterPro)
Lac1g3361 993 Pfam Leucine Rich Repeat 111 133 IPR001611 GO:0005515(InterPro)
Lac1g3361 993 Pfam Leucine Rich Repeat 208 230 IPR001611 GO:0005515(InterPro)
Lac1g3361 993 Pfam Leucine Rich Repeat 184 206 IPR001611 GO:0005515(InterPro)
Lac1g3361 993 Pfam Leucine Rich Repeat 448 469 IPR001611 GO:0005515(InterPro)
Lac1g3361 993 Pfam Leucine Rich Repeat 135 157 IPR001611 GO:0005515(InterPro)
Lac1g3361 993 Pfam Leucine Rich Repeat 352 372 IPR001611 GO:0005515(InterPro)
Lac1g3361 993 Gene3D Transferase(Phosphotransferase) domain 1 768 981 - -
Lac1g3361 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3361 993 SMART serkin_6 680 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3361 993 Gene3D Ribonuclease Inhibitor 18 172 IPR032675 -
Lac1g3361 993 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 19 181 - -
Lac1g3361 993 Gene3D Phosphorylase Kinase; domain 1 662 767 - -
Lac1g3361 993 Gene3D Ribonuclease Inhibitor 173 298 IPR032675 -
Lac1g3361 993 FunFam Leucine-rich receptor-like protein kinase family protein 199 297 - -
Lac1g3361 993 SUPERFAMILY Outer arm dynein light chain 1 447 582 - -
Lac1g3361 993 SUPERFAMILY L domain-like 236 489 - -
Lac1g3361 993 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 962 IPR050647 -
Lac1g3361 993 SUPERFAMILY Protein kinase-like (PK-like) 671 959 IPR011009 -
Lac1g3361 993 FunFam Receptor-like protein kinase HSL1 303 610 - -
Lac1g3361 993 ProSiteProfiles Protein kinase domain profile. 680 969 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3361 993 SUPERFAMILY L domain-like 42 302 - -
Lac1g3361 993 Pfam Leucine rich repeat N-terminal domain 19 59 IPR013210 -
Lac1g3361 993 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 768 975 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0527 Lac-Chr12:5678506 Lac1g3361 Lac-Chr1:53234483 1.10E-11 dispersed
Lac1g3361 Lac-Chr1:53234483 Lac5g1862 Lac-Chr5:36897272 1.10E-86 dispersed
Lac1g3361 Lac-Chr1:53234483 Lac10g0915 Lac-Chr10:7306255 3.80E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85957 PF00069 Pkinase 2.70E-43 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3361 - - - 0.0