Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3368 ATGGGTGCTCTCATCGATCTCAATACCACTGAAGAAGATGATGCCCCCTCTTCTGCTGGCTCCTCTGTTTCTTCTTCTTCCGCTTCTGCTTTGACCTCCTCGCCTTCGCCTTCTGTTACGTCCTCAATTTGCTTGGAGCTATGGCATGCCTGTGCTGGCCCTCTCACGTCTTTGCCCAAGAAAGGGAGCTTGGTTGTGTATTTTCCGCAGGGTCACTTGGAGCAGATGCAAGAATTTCCTGCCACGGCGGCCTATGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTCCAGCTTCACGCCGAGGCAGGAAGTGACGAGGTTTATGCTCAGGTTTCATTGTTTCCTGAAAACGAGCAAATGGAGCACAAGATGCAGGAGGAGATGAACAATGACAGTGAGGAGGAGGATGTTGAAGGTGGCGAGAAGACCACAACTCCCCACATGTTCTGCAAGACCCTTACTGCCTCAGACACTAGTACTCATGGAGGCTTCTCCGTCCCCAGACGAGCTGCCGAGGATTGCTTCCCGCCTTTGGATTATAATCAACAGAGGCCTTCACAAGAGCTCGTTGCAAAGGATCTCCTTGGGCTGAAATGGAAGTTCAGGCACATATATCGTGGGCAGCCTAGAAGGCATTTGCTAACCACCGGATGGAGTGCATTTGTGAACAAGAAAAGGCTTGTTTCGGGTGATGCGGTGCTTTTTCTTAGGGGCAACGACGGGGAATTAAGGCTGGGAATACGAAGAGCTGCACAACTTAAAAGTGGTTCTGCCTTTTCTAATATATGCAGTCAGCAGCTCAACTCTAGTAGTATCGTGGATGTGGTTAATGCTATATCTACAAAAAGTTCCTTTAGCGCATACTACAATCCCAGGGCTACTTCTTCGCAGTTTGTCTTGCCTTTTCACAAGTTCTTGAAGAGCATTAACCATTCTTTCTCTGCTGGAATGAGGTTCAGGCTGAGTTTTGAAACCGAAGATGCTGCAGATCGAAGATATACTGGACATATAACTGGAGTTGGCGATGTAGATCCTATCAGATGGCCAAGATCAAGGTGGAGGTCCCTTATGGTGAGGTGGGACGATGGTGAAACTAACAGGCATGGCAGGGTTTCCCCGTGGGAGATCGAGCCCTCTGGTTCGGTTTCTGTGTCTAGCAACTTGATTCCACCTGGTCTGAAAAGGACCAGGGTTGGACTCTCTTCCACAAAACTAGAGTTTCCAGTTCCAAATGGGATTGGAGCATCAGACTTTGGGGAATCTTTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGTACTCCCATTGATTGTGACGACAACGCTCGTCATCCACCCGAAAAGAGGAGAATGTTTCCTGGTTTACACGGTTCTGGGATAGCTCTGATGAGAAATGGTCCAGGAAACCCACTTATCAACTCTGAAACTTCCTCCCGGGGTATCGTGTTTGATGAATCCTTCCAATTCCATAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGTCCGTTTTATGGTAGGGCCATTGCCACCAATGAAGTTAAGGCAAGTGGTGGTTGCGGTCCTGTTGACGGTGTTCGATTGTCTAGGTCCAAAGATGGATGGCCCATGACAATGCAGTGTGAAAATTTCCTCACACGGTCTTCCATTCCTTCTGTACAAGTCTCATCACCATCTTCTGTATTCATGTTTCAGCAGTCAATGGTTCCTGTTCAAAGCTTTAATTCACATAACCGTGGCAATTTCGCAGAACAGAGGGTTATGAACAAAAGTACATCCCATAATTCTGGGACAGCATTTATGACTGACCATAGCTTGAATACCGAAGTCCCACAAGGCATGCGTCCCACTTCAGTGGGTGAGCAAAATCAGCTCGGCCTATCAGATCCTTCTACAACAGCATCAGCGTTTACAGGCAGTAAAGATCTGTCCTCAACTTGCAAGGCTGGCTGTAGGTTGTTCGGTTTTTCATTGACAGAGGAAAAGAATGTTGGGAACACAGATCAGGCTTCTCCAGCAACAACTCCAATTAATGCAGGAACAACCACTGTTTTGTCCAATATTGGAATACAATGTCCATTGAAGTCTCCACTGATGAGCAAGGTGGTTGGAAGCAACTGTACCAAAGGGGCTTTCCAGTACAACTTTGCAAATTACAGTACCTACTACTGA 2187 47.19 MGALIDLNTTEEDDAPSSAGSSVSSSSASALTSSPSPSVTSSICLELWHACAGPLTSLPKKGSLVVYFPQGHLEQMQEFPATAAYDLPPHILCRVIDVQLHAEAGSDEVYAQVSLFPENEQMEHKMQEEMNNDSEEEDVEGGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKSGSAFSNICSQQLNSSSIVDVVNAISTKSSFSAYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFRLSFETEDAADRRYTGHITGVGDVDPIRWPRSRWRSLMVRWDDGETNRHGRVSPWEIEPSGSVSVSSNLIPPGLKRTRVGLSSTKLEFPVPNGIGASDFGESLRFQKVLQGQEILGYSTPIDCDDNARHPPEKRRMFPGLHGSGIALMRNGPGNPLINSETSSRGIVFDESFQFHKVLQGQEIFPSPFYGRAIATNEVKASGGCGPVDGVRLSRSKDGWPMTMQCENFLTRSSIPSVQVSSPSSVFMFQQSMVPVQSFNSHNRGNFAEQRVMNKSTSHNSGTAFMTDHSLNTEVPQGMRPTSVGEQNQLGLSDPSTTASAFTGSKDLSSTCKAGCRLFGFSLTEEKNVGNTDQASPATTPINAGTTTVLSNIGIQCPLKSPLMSKVVGSNCTKGAFQYNFANYSTYY 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53290925 53295316 - Lag0013860.1 Lac1g3368 596939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3368 728 Pfam Auxin response factor 277 358 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac1g3368 728 MobiDBLite consensus disorder prediction 1 36 - -
Lac1g3368 728 FunFam Auxin response factor 314 385 - -
Lac1g3368 728 SUPERFAMILY DNA-binding pseudobarrel domain 146 260 IPR015300 -
Lac1g3368 728 Gene3D - 149 253 IPR015300 -
Lac1g3368 728 FunFam Auxin response factor 149 253 - -
Lac1g3368 728 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677(InterPro)
Lac1g3368 728 SMART B3_2 151 253 IPR003340 GO:0003677(InterPro)
Lac1g3368 728 Gene3D - 314 388 - -
Lac1g3368 728 MobiDBLite consensus disorder prediction 11 36 - -
Lac1g3368 728 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 676 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac1g3368 728 CDD B3_DNA 149 251 IPR003340 GO:0003677(InterPro)
Lac1g3368 728 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3368 Lac-Chr1:53290925 Lac3g0024 Lac-Chr3:237205 6.60E-94 dispersed
Lac1g3368 Lac-Chr1:53290925 Lac1g3550 Lac-Chr1:54711541 1.10E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23384 PF02362 B3 1.60E-21 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3368 K14486 - csv:101220018 1292.72