Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3371 ATGGGAAAGCATTCGAAGACCAGCTGCAAATCGGCTTCCCACAAGCTCTTTAAGGATAAGGCGAAGAACCGTGTCGATGATCTGCAAAGTATATTTGTAGATTTGCAATATGCAAGGAAAGAGAGCCGCTCAGTTGATGTGGCAGTTCTCGAGGAACAAGTTCATCAGATGCTTCGTGAGTGGAAAGCTGAGCTGAACGAGCCCTCTCCAGCATCCTCTTTGCAACAAGGTGGAAGTCTTGGGTCATTTTCATCCGACATTTGTCGATTGTTACAACTTTGCGAGGAGGATGATGATGCATCTAGTCCATTAGCTGCTCCGAAGCCTGAACCTAATGAACAAAATCTGCAGGTTGGAGATACTATGGCACTTCAAGAGGGATATAATATGAATCGTGTACACCAAGAACCAAGCTTCCCTCTAGTTGATCAATGCAAGAACTCCCCTTCTGGAGTTCATGGTATGGCTATGAATAACTTGGAAGGGCCTACACATTTGGAATGTCATCAGTTTGATTTACATCAAGGCATCGAGCACAGCTTTTACTCTCTCCTTAATGGTAGAGGTTTGTGTGGGGAGGGTGCAATTCCTCATGTTTCTAGCTACTGTCCCAGCATATGCCCTCCACCTGCTGCTTTCTTGGGCCCAAAGTGTGCACTTTGGGATTGCCCACGACCTGCCCAAGGGTTGGATTGGTGTGAGGACTACTGTAGCAGTTTTCATGCTGCCTTGGCATTGAACGAAGGCCCTCCTGGAATGGGTCCAGTTTTACGACCTGGTGGCATTGGTCTGAAGGATGGTTTACTTTTTGCTGCTCTTAGTGCAAAGGCACAAGGAAAAGATGTTGGTATCCCTGAATGTGAGGGAGCTGCCACGGCAAAATCCCCATGGAATGCTCCTGAACTTTTTGATTTGTCAATATTGGAGGGTGAGATGATTAGGGAGTGGCTTTTCTTTGATAAGCCTCGTAGAGCATTTGAGAGTGGGAATAGGAAGCAGAGGTCATTGCCTGATTATAGTGGACGTGGTTGGCATGAATCAAGAAAGCAAGTGATGAATGAGTTTGGAGGGCTGAAAAGATCTTATTACATGGATCCTCAGCCATTGAACCACTTTGAGTGGCATCTTTATGAATATGAAATTAATAAGTATGATGCCTGCGCTTTGTATAGATTGGAGCTGAAACTTGTTGATGGGAAAAAAAGTTCTAAGGCGAAAGTAACAAATGATTCAGTTGCTGATTTACAGAGGCAAATGGGGAGACTGACTGCTGAGTTTCCTGATAATAAACGCTTTGTGAAGGGGAGGACCAAAATTAACTCAAAAGTTGGTATTGGAAATGTTTACCCCTCAGCAAATAGAGTCATGCCACCCAATGGAACATATGACTATATGCTTCATGCACAATACGATTACCTTGTGGAGAATTTGAGCGAATATTACCTTACATAG 1452 44.28 MGKHSKTSCKSASHKLFKDKAKNRVDDLQSIFVDLQYARKESRSVDVAVLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSSDICRLLQLCEEDDDASSPLAAPKPEPNEQNLQVGDTMALQEGYNMNRVHQEPSFPLVDQCKNSPSGVHGMAMNNLEGPTHLECHQFDLHQGIEHSFYSLLNGRGLCGEGAIPHVSSYCPSICPPPAAFLGPKCALWDCPRPAQGLDWCEDYCSSFHAALALNEGPPGMGPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAKSPWNAPELFDLSILEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDACALYRLELKLVDGKKSSKAKVTNDSVADLQRQMGRLTAEFPDNKRFVKGRTKINSKVGIGNVYPSANRVMPPNGTYDYMLHAQYDYLVENLSEYYLT 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53317558 53320228 + Lag0013863.1 Lac1g3371 596942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3371 483 PANTHER TRANSCRIPTION FACTOR VOZ1 1 481 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(PANTHER)|GO:0048578(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3371 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3371 Lac-Chr1:53317558 Lac9g2010 Lac-Chr9:39717427 6.00E-144 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac1g3371 . 2 482 VOZ-9 Transcription Factor Family AT1G28520 71.3 2.3e-199 692.6
Lac9g2010 . 6 470 VOZ-9 Transcription Factor Family AT1G28520 55.7 1.3e-135 480.7
Lac9g2010 . 11 443 VOZ-9 Transcription Factor Family AT2G42400 50.1 1.9e-107 387.1
Lac1g3371 . 27 422 VOZ-9 Transcription Factor Family AT2G42400 50.7 3.3e-104 376.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004233 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23385 None None None None Lac TF