Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3423 ATGAATGTCAGAAATCCAACGGCTGCATCATTGCCACACTCCTCTGCAGTTTACAGCGAAGATGGAGAAATCATGGTCTTGACCACACAATGGCTTTCCTCAGTCACAGTCAGGTTTGTTGTTCAACGTTTTGGTAGGGATAGGGACAATCTCAGCCCTTCAATTACCCACATCTCGAGATTTCCTGCTGGACCAGCTCTCGCTTTCCTTTTCCTTCCCTCTTCTTTTGTGTTTACAAGCTTGGTAATGGAAGTTGTAAAGCTGATTCTGTTGCTGTTCGTCCTCACCTGGGTGGTCTCTGCCTCAGACAGTCATTTGTCTCCGAAAGGTGTAAACTATGAAGTGGCGGCTTTGATGTCAGTGAAGAGTAGGATAAGGGATGAGCGAAGAGTGATGGAGGGTTGGGACATAAATTCGGTTGATCCATGCACCTGGAATATGGTTGCTTGCTCTGCTGAGGGCTTTGTGATTTCTCTTGAAATGCCAAATATGAGCTTATCTGGAACGCTTTCCCCTAGCATTGGAAACCTGAGTCACCTTCGGACAATGCTGTTGCAAAATAATGGATTATCTGGCCCAATCCCTGATGATATAGGAGCACTTTCAGAGCTTCAGACTCTTGACCTTTCTAGTAACCAGTTTGAAGGAGGCATTCCGAGTTCTTTGGGTTTTCTTACTCATCTAAATTACTTGAAGCTTAGTAGTAACAAGTTAAGTGGACCAATACCGGAATCTGTTGCAAATATCTCGGGCCTTTCCTTTTTGGATTTATCGAATAATAATCTCAGTGGTCCAACTCCAAGAATACTAGCCAAAGAGTACAGTGTTGCAGGGAATAGCTTCCTTTGTGCATCTTCATCATCTAAAGTTTGTGGAGTAGTTTCAAAACCAGTTAACGAAACTGCTTCGCCTCACAAAGATAATGGCCATCGTCACTTGGTTCTTTCCATAGCTCTGATTGTCAGTTTCACATTTGTGGTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGTTATAGATCTCATCTTGTCTTTACATCCTACGTGCAGCAAGATTATGAATTTGATATAGGTCATCTGAAAAGGTTTGCATTCCGTGAACTACAAAAGGCAACATGTAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCTGTCAAGAGACTGAAAGATCCAAATTATACTGGAGAAGTGCAGTTCCAAACTGAAGTTGAAATGATTGGCTTAGCAGTGCACCGCAACCTCTTGCGTTTGTATGGCTTTTGTATGACGCCAGATGAGAGGTTGCTTGTTTATCCATATATGCCAAATGGGAGTGTTGCTGACCGCCTGAGAGATGCAGGCCAAGAGAAGCCATCATTGAATTGGAACAGAAGATTGCGTATTGCCCTTGGCGCAGCACGTGGACTTCTATACTTGCATGAGCAGTGTAACCCAAAAATTATTCACCGAGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCCGTGGTCGGGGACTTTGGTCTGGCAAAGATGTTAGATAGGAGGGATTCTCATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACTGATGTTTTTGGATTTGGGATATTGGTTCTGGAACTCTTAACAGGGCAAAAAGCACTAGATGCTGGCAATGGTCAGGTTCGAAAGGGAATGATTCTGGAATGGGTTAGAACATTACATGAGGAGAAGAGGTTAGATGTGCTGGTGGACAGGGATCTAAAAGGATGTTTTGATGCAATGGAGCTGGAAAAAGCCGTAGAGTTGGCTCTACAGTGTACTCAGTCACATCCACAACTCAGACCAAAGATGTCCGAGATTTTGAAGGTTTTAGAAGGTCTTGTTGGACAGTCGAGCCAAATGGAGGAATCCCCAGGTGGAGCAAGTCTATACGAGGATAGAGCTCACAGTTTCTCCAGAAATTACAGTGATATTCATGAAGAATCTTCATTCGTCGTTGAAGCCATGGAGCTTTCAGGACCTCGGTGA 2097 43.54 MNVRNPTAASLPHSSAVYSEDGEIMVLTTQWLSSVTVRFVVQRFGRDRDNLSPSITHISRFPAGPALAFLFLPSSFVFTSLVMEVVKLILLLFVLTWVVSASDSHLSPKGVNYEVAALMSVKSRIRDERRVMEGWDINSVDPCTWNMVACSAEGFVISLEMPNMSLSGTLSPSIGNLSHLRTMLLQNNGLSGPIPDDIGALSELQTLDLSSNQFEGGIPSSLGFLTHLNYLKLSSNKLSGPIPESVANISGLSFLDLSNNNLSGPTPRILAKEYSVAGNSFLCASSSSKVCGVVSKPVNETASPHKDNGHRHLVLSIALIVSFTFVVSVVLLVGWVHCYRSHLVFTSYVQQDYEFDIGHLKRFAFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLRIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQVRKGMILEWVRTLHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTQSHPQLRPKMSEILKVLEGLVGQSSQMEESPGGASLYEDRAHSFSRNYSDIHEESSFVVEAMELSGPR 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53708314 53712887 + Lag0013915.1 Lac1g3423 596994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3423 698 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524(InterPro)
Lac1g3423 698 FunFam Somatic embryogenesis receptor kinase 1 344 450 - -
Lac1g3423 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3423 698 Gene3D Transferase(Phosphotransferase) domain 1 451 659 - -
Lac1g3423 698 SUPERFAMILY L domain-like 113 273 - -
Lac1g3423 698 Gene3D Phosphorylase Kinase; domain 1 345 450 - -
Lac1g3423 698 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 88 698 - -
Lac1g3423 698 SMART serkin_6 375 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3423 698 Gene3D Ribonuclease Inhibitor 111 293 IPR032675 -
Lac1g3423 698 FunFam Putative LRR receptor-like serine/threonine-protein kinase 111 293 - -
Lac1g3423 698 ProSiteProfiles Protein kinase domain profile. 375 651 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3423 698 SUPERFAMILY Protein kinase-like (PK-like) 358 648 IPR011009 -
Lac1g3423 698 Pfam Protein kinase domain 378 645 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3423 698 Pfam Leucine rich repeat N-terminal domain 112 151 IPR013210 -
Lac1g3423 698 FunFam Somatic embryogenesis receptor-like kinase 1 451 662 - -
Lac1g3423 698 Pfam Leucine Rich Repeat 227 248 IPR001611 GO:0005515(InterPro)
Lac1g3423 698 Pfam Leucine Rich Repeat 204 225 IPR001611 GO:0005515(InterPro)
Lac1g3423 698 Pfam Leucine Rich Repeat 252 271 IPR001611 GO:0005515(InterPro)
Lac1g3423 698 Pfam Leucine Rich Repeat 179 201 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3423 Lac-Chr1:53708314 Lac6g1302 Lac-Chr6:13140525 4.70E-158 dispersed
Lac3g0281 Lac-Chr3:2006878 Lac1g3423 Lac-Chr1:53708314 5.80E-73 transposed
Lac1g3423 Lac-Chr1:53708314 Lac6g2998 Lac-Chr6:47585561 1.50E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85961 PF00069 Pkinase 1.80E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3423 - - - 0.0