Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3435 ATGGGTCGTGAGAAGAAGCGACTTCCACGAGTAATGACTGTTGCGGGGGTAATATCAGAACTTGATGATGATCAGGCAAATAGTGTGACTTCCGAGGGACCTTCCTCAGTTGTGCAAGACCGTATAATTATTGTTGCCAATCAGCTTCCTATTAAAGCTAAGCGTAGACCAGATAATAAAGGCTGGAGTTTTAGTTGGGATGAAGATTCTTTGCTGTGGCAGCTCAAGGATGGTTTGCCTGAAGAAATGGAGGTTTTGTATGTAGGATCTTTGCGGGTGGATGTTGATTCTAGCGAACAGGATGATGTATCACAACTTCTGTTGGAGAGGTTTAAGTGTGTTCCTGCGTTTTTGCCGCATGACATTTTATCAAAATTTTATCATGGTTTTTGTAAGCAGCAATTGTGGCCACTCTTTCATTATATGCTTCCGTTCTCGGCTACTCATGGTGGTCGGTTTGATCGGTCTCTGTGGGAGGCATATGTAGCAGCAAATAAAATTTTTTCTCAAAGGGTGATTGAGGTCATAAACCCAGATGATGACTTTGTATGGATTCATGATTACCATTTAATGGTGCTGCCCTCCTTCTTGCGGAGAAGATTTACAAGATTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCCTCAGAAATATACAGGACTTTGCCAGTGAGGGAAGAAATTCTTAAGGCACTTTTGAATTCAGACCTTATTGGTTTTCACACTTTTGACTATGCTCGACATTTCCTGTCTTGTTGTAGTCGAATGTTGGGTTTGGAATATCAGTCAAAGAGGGGTTATATTGGGTTGGAATATTTTGGAAGGACAGTGGGGATAAAGATCATGCCCGTTGGAATTCACATGGGCCAGATGGAGTCAGTGTTAAGACTAGCTGATAAAGACTGGAGGGTACAGGAGCTCACGCGACAGTTTGAAGGAAAAGTTGTCTTACTTGGAGTTGATGATATGGACATCTTTAAAGGGGTCAATCTGAAGTTGTTGGCAATGGAACAAATGCTAAAGCAACATCCAAAGTGGCAGGGAAGAGCTGTTTTCGTACAGATTGCAAACCCAGCGAGAGGAAGAGGGAAAGATCTGGAGGAAATACAAGATGAAATACAGGAATGCTGCAAGAGAATTAATGAAACTTTTGGACAGCCAAATTATGAACCAATTGTGTTCATTGATCGGCCTGTTTCTCTCACTGAAAGAGCTGCATACTATACTATTGCCGAATGTGTTGTAGTCACAGCGGTTAGGGATGGTATGAACCTAACTCCTTATGAGTATGTTGTCTGCAGGCAGGGAGCCTCTGGATCAGATTATAGCACAGAAACAAATGGACCACAAAAAAGCATGCTAGTCATATCAGAATTCATGGGGTGTTCCCCTTCTCTTAGTGGTGCAATACGGGTTAACCCATGGAACATTGAAGCAACTGCCGAAGCATTGAACGAAGCAATATCAATGGCTGATGCTGAGAAGCAATTGCGCCATGAAAAACATTATAAATATAAGACGATGCTGGGAATTGGGTTGGGCTTTGGTTTCAGAGTTGTAGCACTGGATCCTAACTTTAGAAAGCTGTCTATTGATGCCATTGTAGCTGCGTATTCGAGGTCTAAAAGGAGGGCTATACTTTTGGATTATGATGGCACTGTCATGCCACAAACTTCAATTGATAAGACCCCAAGTCATCAAGTTATTTCAATCATAGATTCACTTTGTGATGATGTTAGGAATACTGTTTTTGTTGTCAGTGGAAGAGGGCGTGATAGTTTGGGCAACTGGTTTTCTCCTTGTGATAAACTAGGGATTGCCGCAGAGCATGGCTATTTTATGAGGTGGTCTGCTGATAAGGACTGGGAAAATTGTGGTCAAGGTAGTGATTTTGGTTGGATACAAATCGCAGAGCCAGTCATGAAATTATATACAGAAGCTACTGACGGCTCTTCTATTGAAACCAAGGAAAGTGCCTTGGTGTGGCACCACCAGGATGCGGACCCTGATTTTGGTTGCAGCCAGGCCAAGGAACTATTGGATCACCTTGAAAGTGTGCTGGCAAATGAACCAGTTGCCGTAAAAAGTGGTCAGTTTATTGTAGAAGTGAAGCCACAGGGAGTCAGTAAAGGCGTGGTGGCAGAAAAAATCTTCGCGTCGATGGCGGATGCAGGAAGACGGGCTGATTTTGTGCTATGCATTGGTGATGATAGATCTGATGAAGACATGTTTGAGATAATTGGTAATGCAGTATCAAATGGCGTCCTCTCTTCCAATACATTAGTTTTTGCATGCACAGTCGGACAGAAACCAAGCAAGGCTAAGTATTACTTGGATGACACAACTGAGGTTATAAACATGCTTGAAGCCCTTGCAGAAGTTTCAGACATTTCTTCCCCTCCAGAATCCCCTTGA 2418 42.72 MGREKKRLPRVMTVAGVISELDDDQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLWQLKDGLPEEMEVLYVGSLRVDVDSSEQDDVSQLLLERFKCVPAFLPHDILSKFYHGFCKQQLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELTRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLKQHPKWQGRAVFVQIANPARGRGKDLEEIQDEIQECCKRINETFGQPNYEPIVFIDRPVSLTERAAYYTIAECVVVTAVRDGMNLTPYEYVVCRQGASGSDYSTETNGPQKSMLVISEFMGCSPSLSGAIRVNPWNIEATAEALNEAISMADAEKQLRHEKHYKYKTMLGIGLGFGFRVVALDPNFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKTPSHQVISIIDSLCDDVRNTVFVVSGRGRDSLGNWFSPCDKLGIAAEHGYFMRWSADKDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGVVAEKIFASMADAGRRADFVLCIGDDRSDEDMFEIIGNAVSNGVLSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53783780 53788023 + Lag0013927.1 Lac1g3435 597006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3435 805 Pfam Glycosyltransferase family 20 41 506 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lac1g3435 805 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 40 506 - -
Lac1g3435 805 CDD HAD_TPP 546 787 - -
Lac1g3435 805 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 674 804 - -
Lac1g3435 805 Gene3D - 674 800 IPR023214 -
Lac1g3435 805 Gene3D - 544 650 IPR023214 -
Lac1g3435 805 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 34 293 - -
Lac1g3435 805 NCBIfam trehalose-phosphatase 542 793 IPR003337 GO:0005992(InterPro)
Lac1g3435 805 Gene3D Glycogen Phosphorylase B; 31 301 - -
Lac1g3435 805 NCBIfam HAD-IIB family hydrolase 547 752 IPR006379 -
Lac1g3435 805 CDD GT20_TPS 41 506 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lac1g3435 805 Pfam Trehalose-phosphatase 548 782 IPR003337 GO:0005992(InterPro)
Lac1g3435 805 Gene3D Glycogen Phosphorylase B; 302 507 - -
Lac1g3435 805 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 6 795 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lac1g3435 805 SUPERFAMILY HAD-like 545 793 IPR036412 -
Lac1g3435 805 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 544 661 - -
Lac1g3435 805 FunFam Alpha,alpha-trehalose-phosphate synthase 295 508 - -
Lac1g3435 805 FunFam Trehalose-6-phosphate synthase 2 628 707 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3435 Lac-Chr1:53783780 Lac5g0203 Lac-Chr5:1772768 0.00E+00 dispersed
Lac1g3435 Lac-Chr1:53783780 Lac12g0751 Lac-Chr12:7898140 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3435 K16055 - csv:101213082 1559.27